Query= MSMg01no305_n16.b1 MSMg01no305_n16.b1 CHROMAT_FILE:
MSMg01no305_n16.b1 PHD_FILE: MSMg01no305_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:18 2005
(413 letters)
>mm_chr8_29789816_29790628
Length = 813
Score = 590 bits (305), Expect = e-173
Identities = 311/313 (99%)
Strand = Plus / Minus
Query: 1 ctgtctctacagcggttattaatcacctacattccagtgttcagagggaaaaaatacagg 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgtctctacagcggttattaatctcctacattccagtgttcagagggaaaaaatacagg 254
Query: 61 aatcttagcaagtcatatcaaaggaggtattttcaaataagtggccagtactatttttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatcttagcaagtcatatcaaaggaggtattttcaaataagtggccagtactatttttaa 194
Query: 121 aaattttttattaggcattttcctcatttacatttccaatgctatcccaaaagtccccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaattttttattaggcattttcctcatttacatttccaatgctatcccaaaagtccccca 134
Query: 181 tacctaccccccactccccctttttggctctggcattcccctgtactggggcatataaag 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 133 tacctaccccccactccccctttttggccctggcattcccctgtactggggcatataaag 74
Query: 241 tttgcaagtccaatgggcatctctttgcagtgatggccgactaggccatcttttgataca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tttgcaagtccaatgggcatctctttgcagtgatggccgactaggccatcttttgataca 14
Query: 301 tatgcagctagag 313
|||||||||||||
Sbjct: 13 tatgcagctagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_n16.g1 MSMg01no305_n16.g1 CHROMAT_FILE:
MSMg01no305_n16.g1 PHD_FILE: MSMg01no305_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:18 2005
(709 letters)
>mm_chr8_29734046_29735158
Length = 1113
Score = 1321 bits (683), Expect = 0.0
Identities = 704/713 (98%), Gaps = 4/713 (0%)
Strand = Plus / Plus
Query: 1 ccctgctctaatctagtcctactgagctgtcactaaagtagatggggaccagcgtacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctgctctaatctagtcctactgagctgtcactaaagtagatggggaccagcgtacttc 260
Query: 61 tttctctggctggggattttgtctgtggcttgtcatccttgcctcaattttgacctcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctctggctggggattttgtctgtggcttgtcatccttgcctcaattttgacctcctt 320
Query: 121 tggggttcaccctttctcagagagtttgtatgttggattctgcctaccatctgttaagga 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagggttcaccctttctcagagagtttgtatgttggattctgcctaccatctgttaagga 380
Query: 181 ctcacaatggttagaaaacagctccttctgctagcctatttcccctttgacacctaaaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcacaatggttagaaaacagctccttctgctagcctatttcccctttgacacctaaaac 440
Query: 241 ctagtaattgcaacattaattgccagccagtaataagaatcacattaataataggtttac 300
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ctagtaattgcaacattaattgccagccagtaataagaatcacaagaataataggtttac 500
Query: 301 cactgtagaaacttcttgtacaagttttgagagttctatccagaatcttatttacatttg 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgcagaaacttcttgtacaagttttgagagttctatccagaatcttatttacatttg 560
Query: 361 atgcccctggacatgctgtataaatatgttaaaagtacccaataagccttgaagggattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcccctggacatgctgtataaatatgttaaaagtacccaataagccttgaagggattg 620
Query: 421 tttccaaataagatttcttgccttgggaatgatacaaagaaaatctggacatgggcacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttccaaataagatttcttgccttgggaatgatacaaagaaaatctggacatgggcacct 680
Query: 481 gaagttaaagtaagtctcagaaaaatatcaacaaatcctaagtacttctggct----aag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 gaagttaaagtaagtctcagaaaaatatcaacaaatcctaagtacttctggctgactaag 740
Query: 537 gatgctttcctctgtaccaattatctcctgtcagattgagaactacatgaacccacttaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgctttcctctgtaccaattatctcctgtcagattgagaactacatgaacccacttaa 800
Query: 597 ttttaccacttgactaattatcacttgactaatttttgaaaatatcttatacttgatgtg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttttaccacttgactaattatcacttgactaatttttgaaaatatcttatacttgatgtg 860
Query: 657 acaggacagcaatctgaatctactgtatttatagactagcggagtaatgaaaa 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acaggacagcaatctgaatctactgtatttatagactagcggagtaatgaaaa 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1113
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1103
Effective search space: 770997
Effective search space used: 770997
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
