BAC Information

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BAC

Clone NameMSMg01-306F19
Chromosome8 (Build37)
Map Location 28,980,541 - 28,980,929
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
Downstream geneEG666422, LOC666430, EG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306F19.T7 (MSMg01no306_f19.b1)MSMg01-306F19.TJ (MSMg01no306_f19.g1)
ACCAG431048AG431049
length734736
length of high quality
(start - end)
---400 (237 - 636)
definitionCHROMAT_FILE: MSMg01no306_f19.b1 PHD_FILE: MSMg01no306_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:07 2005CHROMAT_FILE: MSMg01no306_f19.g1 PHD_FILE: MSMg01no306_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGAACTTATCGTGTGGACCATCACGATTGCCAAGATATTCAGTG
TCTAGAAAGATAAATTATATTGACCGAGTGAGTTAAAAATAAAATATTTT
CCTATCTCGTTTGACTACTAATTTGAGGATATTCAAATAAGTTGGGCCTT
ATTCATATTGGTGAATATTATGTAACTGCATAACAGAATATTGACATAGT
ATGTAGGGGTCTCCTCAGAAAAACCACTAATAAATACAAGTGTTAAACAT
GTAAACGCTTTGAAATATGTATCTTTTCAGAAAGATAGAAAAGGCACGAA
GAGTTGGCAAAAGTTTGTTTTGCACAACACCACCAACTATACTTACATCA
TCCTTCCTGAACATAACATAAGGACATATTTGATTTAAATTTATTAGTTG
CACGAGATTATCAAGAAAAAATATACATGCTAAAAAATGGTACAATTAAG
ATATGCATATATCAAAGCCCTCTCTGAGTACAGAAATAAAACTTGAAGGA
ATCAAACAGTTATATGTATGTGATCATGTGTGTGTATGTATGTGAGTTAG
TCCAGATTACTATAGAAACTATCATATGTTACATAGTTGATAAGGAACAA
AATTTACCTCTGACAGTTCTGAAGACTGGAGAGACCAAGGTCCAGGCACT
GATCTCGCAAGATCATTGAGCGCATGAGCCTATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGCAGCCAGAGGGACAATA
GATTAACACTCTGGGGATGCTGGACTAGATTAGAAACAGATTAGAAAACA
GTGGGGAGAAACCTCATGGAACTTAATAATAAATAATAATAATATAAAGA
AGGAGATGATGAAGGAGGAGGAGCAGTAAAAGGTAGACATGATGGTCCAT
GCCTTCACATCTATAATACTGAGGCAGGAAGGTCACCAGTACAAGGGCAG
CTTTGGCTGCATAGTGAGAATCTGATAATTGGGTAGGTGTGGTTTACAGG
AAGGGGGGGATATACTGAAACTATAAATTTAAAATAGGATTAACAAGAGG
TACTGCAGAGAAACAAGTTTTAAAAATATATCACATGTACTGGCTAGTTT
TGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCATTT
GAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTG
ATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACAATCCCGGGCTTGCAGTC
TTGGGTTCTATAACAGAGCAGGCTGATCAAGCCAGGGGAAACAAGCCAGT
AGAGAACATCCCTCCATGGCCTCTGCAGCAGCTCCTGCTTCCTGACCTGC
TTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_f19.g1 MSMg01no306_f19.g1 CHROMAT_FILE:
MSMg01no306_f19.g1 PHD_FILE: MSMg01no306_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:07 2005
         (400 letters)



>mm_chr8_28980341_28981140
          Length = 800

 Score =  613 bits (317), Expect = e-180
 Identities = 375/401 (93%), Gaps = 13/401 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgatggtccatgccttcacatctataatactgaggcaggaaggtcaccagtacaagg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgatggtccatggcttcacatctataatactgaggcaggaaggtcaccagtacaagg 260

                                                                       
Query: 61  gcagctttggctgcatagtgagaatctgataattgggtaggtgtggtttacaggaagggg 120
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 261 gcagctttggctgcatagtgagaatctgagaattgggtgggtgtggtttacaggaagggg 320

                                                                       
Query: 121 gggatatactgaaactataaatttaaaataggattaacaagaggtactgcagagaaacaa 180
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gtgatatactgaaactataaatttaaaatagaattaacaagaggtactgcagagaaacaa 380

                                                                       
Query: 181 gttttaaaaatatatcacatgtactggctagttttgtgtcaacttgacacagctggagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttaaaaatatatcacatgtactggctagttttgtgtcaacttgacacagctggagtt 440

                                                                       
Query: 241 atcacagagaaaggagcttcatttgaggaaatgcctccatgagatccaactgtaaggcat 300
           | |||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 441 accacagagaaaggagcttcaggtgaggaaatgcctccatgagatccaactgaaaggcat 500

                                                                       
Query: 301 tttctcaattagtgatcaagggggaaaggccccttgtgggtgggacaatccc-gggcttg 359
           ||||||||||||           ||||||||||||||||||||||| ||||| |||||||
Sbjct: 501 tttctcaattag-----------gaaaggccccttgtgggtgggaccatccccgggcttg 549

                                                    
Query: 360 cagtcttgggttctataacagagcaggctgatcaagccagg 400
            |||||||| |||||||| |||||||||||| |||||||||
Sbjct: 550 tagtcttgg-ttctataagagagcaggctgagcaagccagg 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)