BAC Information

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BAC

Clone NameMSMg01-306I01
Chromosome8 (Build37)
Map Location 33,571,616 - 33,724,960
singlet/doubletdoublet
Overlap geneEG546052
Upstream geneLOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306I01.T7 (MSMg01no306_i01.b1)MSMg01-306I01.TJ (MSMg01no306_i01.g1)
ACCAG431146AG431147
length726726
length of high quality
(start - end)		681 (46 - 726)478 (78 - 555)
definitionCHROMAT_FILE: MSMg01no306_i01.b1 PHD_FILE: MSMg01no306_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:18 2005CHROMAT_FILE: MSMg01no306_i01.g1 PHD_FILE: MSMg01no306_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(33,724,284 - 33,724,960)(33,571,616 - 33,572,093)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTATTTGTCTATCTAAATCAGATGTCCACAATTCACTATAAGTGAG
TAGATGACATGCATATGTTCTGCCCCTGTCGTCACAATAGTAGTTTTTAA
CCAGGTCAGTGTGCATGTAGGTACAAGATGCAGAAGACATATTGTAGCAC
CAGCATCCACACTGTATCTGTAGGTACAAGATGCAGAAGACATAGTGTAA
CACCAGCATCCACACTGTATCTGTAGGTACAAGATGCAGAAGACATAGTG
TAACACCAGCATCCACACTGTATCTGTAGGTACAAGATGCAGAAGACATA
GTGTAACACCAGCATCCACACTGTATCTATAGGTACAAGATGCAGAAGAC
ATAGTGTAACACCAGCATCCACACTGTATCTGTAGGTACAAGATGCAGAA
GACATAGTGTAGCACCAGCATCCACACTGTATCTGTAGGTACAAGATGCA
GAAGACATAGTGTAGCACCAGCATCCACACTGTATCTGTAGGTACAAGAT
GCAGAAAACATACTGTAGCAGCAGCATCCATATTTGTCTCAAGCAGCAGA
GAAACTAGGAAAATAAAAGCCCTGGAAAATTAAGTATTATGCACTTGTTT
TGCAATTTGAATATGCTAGAGTAAATAGGTGAATCATATTTTCTTTACCT
TTCCTTTTTCTTTTCTCTCTGACCCT

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCGAAATTCTTCATATATATTTCAGAATAATTTA
ATGTTGGCAGAATGTTTACTTTATGCCTGAATATTTATAACTCATGGCTT
TTATCAGTAGGAAAAAGTAGAATTATGTTCAACATTTAAGTTATCTCTGA
TTAAGACATAACAAGGGATGTCAGAAGAACAAAAAAATTGTATTAGAGCA
AAATTAAGTACACAAAAAGTTATTTGCTTCCTTTAGTTAAAAAATGAAAA
CAATGGACTTCAATAGAATAACTCAGAAGTGATTTCTTCCAAGTATTGCA
CCAATGAAATCTTACTGCAATGACTACAATTATAGGCAAATGCCATTTTC
CATTCTTGAAATTATTCCCAGGCTGATATTTTGAAATTATAAATGCTGAT
ACATAATTATTTGTTCCAGTAAAATTCATTTATTGAAATGTTTTTCCTCA
TTTCCTTAGCCATTTACTTAGCAAGGTCATTTATATTAAATATCCTCATT
GAAAGTAGCAATTTTAATATACTTAATAAACTTGTTTTTTTTCTAATGCA
AACTGATCTTAGCAATTTAAGAGGATAAGAATATCTTCCTTTACCTGGGC
CGTGGTGATGTATGCCCTTAATCCCTGTATTCGGGAGGGTAGAGGCAGGC
GGATCTTCTGTGCTCGAAGGTCAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_i01.b1 MSMg01no306_i01.b1 CHROMAT_FILE:
MSMg01no306_i01.b1 PHD_FILE: MSMg01no306_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:18 2005
         (681 letters)



>mm_chr8_33724110_33725190
          Length = 1081

 Score = 1301 bits (673), Expect = 0.0
 Identities = 676/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatttgtctatctaaatcagatgtccacaattcactataagtgagtagatgaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaattctatttgtctatctaaatcagatgtccacaattcactataagtgagtagatgaca 792

                                                                       
Query: 65  tgcatatgttctgcccctgtcgtcacaatagtagtttttaaccaggtcagtgtgcatgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgcatatgttctgcccctgtcgtcacaatagtagtttttaaccaggtcagtgtgcatgta 732

                                                                       
Query: 125 ggtacaagatgcagaagacatattgtagcaccagcatccacactgtatctgtaggtacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggtacaagatgcagaagacatattgtagcaccagcatccacactgtatctgtaggtacaa 672

                                                                       
Query: 185 gatgcagaagacatagtgtaacaccagcatccacactgtatctgtaggtacaagatgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gatgcagaagacatagtgtaacaccagcatccacactgtatctgtaggtacaagatgcag 612

                                                                       
Query: 245 aagacatagtgtaacaccagcatccacactgtatctgtaggtacaagatgcagaagacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aagacatagtgtaacaccagcatccacactgtatctgtaggtacaagatgcagaagacat 552

                                                                       
Query: 305 agtgtaacaccagcatccacactgtatctataggtacaagatgcagaagacatagtgtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtgtaacaccagcatccacactgtatctataggtacaagatgcagaagacatagtgtaa 492

                                                                       
Query: 365 caccagcatccacactgtatctgtaggtacaagatgcagaagacatagtgtagcaccagc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 491 caccagcatccacactgtatctgtaggtacaagatgcagaagacatagtgtaacaccagc 432

                                                                       
Query: 425 atccacactgtatctgtaggtacaagatgcagaagacatagtgtagcaccagcatccaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atccacactgtatctgtaggtacaagatgcagaagacatagtgtagcaccagcatccaca 372

                                                                       
Query: 485 ctgtatctgtaggtacaagatgcagaaaacatactgtagcagcagcatccatatttgtct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctgtatctgtaggtacaagatgcagaaaacatactgtagcagcagcatccatatttgtct 312

                                                                       
Query: 545 caagcagcagagaaactaggaaaataaaagccctggaaaattaagtattatgcacttgtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caagcagcagagaaactaggaaaataaaagccctggaaaattaagtattatgcacttgtt 252

                                                                       
Query: 605 ttgcaatttgaatatgctagagtaaataggtgaatcatattttctttacctttccttttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttgcaatttgaatatgctagagtaaataggtgaatcatattttctttacctttccttttt 192

                            
Query: 665 cttttctctctgaccct 681
           |||||||||||||||||
Sbjct: 191 cttttctctctgaccct 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 137
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 7
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_i01.g1 MSMg01no306_i01.g1 CHROMAT_FILE:
MSMg01no306_i01.g1 PHD_FILE: MSMg01no306_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:18 2005
         (478 letters)



>mm_chr8_33571416_33572293
          Length = 878

 Score =  917 bits (474), Expect = 0.0
 Identities = 477/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatatatttcagaataatttaatgttggcagaatgtttactttatgcctgaatattta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catatatatttcagaataatttaatgttggcagaatgtttactttatggctgaatattta 260

                                                                       
Query: 61  taactcatggcttttatcagtaggaaaaagtagaattatgttcaacatttaagttatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactcatggcttttatcagtaggaaaaagtagaattatgttcaacatttaagttatctc 320

                                                                       
Query: 121 tgattaagacataacaagggatgtcagaagaacaaaaaaattgtattagagcaaaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattaagacataacaagggatgtcagaagaacaaaaaaattgtattagagcaaaattaa 380

                                                                       
Query: 181 gtacacaaaaagttatttgcttcctttagttaaaaaatgaaaacaatggacttcaataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacacaaaaagttatttgcttcctttagttaaaaaatgaaaacaatggacttcaataga 440

                                                                       
Query: 241 ataactcagaagtgatttcttccaagtattgcaccaatgaaatcttactgcaatgactac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataactcagaagtgatttcttccaagtattgcaccaatgaaatcttactgcaatgactac 500

                                                                       
Query: 301 aattataggcaaatgccattttccattcttgaaattattcccaggctgatattttgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattataggcaaatgccattttccattcttgaaattattcccaggctgatattttgaaat 560

                                                                       
Query: 361 tataaatgctgatacataattatttgttccagtaaaattcatttattgaaatgtttttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataaatgctgatacataattatttgttccagtaaaattcatttattgaaatgtttttcc 620

                                                                     
Query: 421 tcatttccttagccatttacttagcaaggtcatttatattaaatatcctcattgaaag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatttccttagccatttacttagcaaggtcatttatattaaatatcctcattgaaag 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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