MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-306J23
Chromosome	8 (Build37)
Map Location	11,981,428 - 11,981,726
singlet/doublet	singlet
Overlap gene	LOC100040155
Upstream gene	Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik
Downstream gene	LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l
Link	Open Mouse BAC browser

Click to get alignment info.

name	Irs2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384783 MGI:109334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col4a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12826 MGI:88454
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col4a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12827 MGI:88455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19332 MGI:102789
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	0710008K08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69225 MGI:1913353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cars2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71941 MGI:1919191
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs, 3 Proteins

name	Ing1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26356 MGI:1349481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102334 MGI:1921840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700016D06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76413 MGI:1923663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665271 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665271 MGI:3645249
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC665363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 687 ESTs, 7 Proteins pseudo : _no_value

name	LOC624710 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624710
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	LOC665373 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665373
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 73 ESTs, 5 Proteins pseudo : _no_value

name	Arhgef7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54126 MGI:1860493
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700018L24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75528 MGI:1922778
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040155 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100040175 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG434280 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434280 MGI:3645522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434279 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434279 MGI:3647910
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Sox1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20664 MGI:98357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700094C09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78634 MGI:1925884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tubgcp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:259279 MGI:2183752
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp11a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50770 MGI:1354735
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040229 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040229
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Mcf2l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17207 MGI:103263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Irs2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487072 GeneID:384783 MGI:109334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin receptor substrate 2 transcript_id : NM_001081212.1

name	Col4a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859527 GeneID:12826 MGI:88454
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type IV, alpha 1 transcript_id : NM_009931.1

name	Col4a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:36031079 GeneID:12827 MGI:88455
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type IV, alpha 2 transcript_id : NM_009932.2

name	Rab20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45593125 GeneID:19332 MGI:102789
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB20, member RAS oncogene family transcript_id : NM_011227.1

name	0710008K08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373590 GeneID:69225 MGI:1913353
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0710008K08 gene transcript_id : NM_026995.2

name	Cars2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149258355 GeneID:71941 MGI:1919191
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs, 3 Proteins product : cysteinyl-tRNA synthetase 2 (mitochondrial)(putative) transcript_id : XM_001474115.1

name	Ing1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130004 GeneID:26356 MGI:1349481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inhibitor of growth family, member 1 transcript_id : NM_011919.4

name	Ankrd10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527191 GeneID:102334 MGI:1921840
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 10 transcript_id : NM_133971.1

name	1700016D06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21313197 GeneID:76413 MGI:1923663
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700016D06 gene transcript_id : NM_024271.1

name	EG665271 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383025 GeneID:665271 MGI:3645249
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG665271 transcript_id : XM_979019.1

name	Arhgef7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130789 GeneID:54126 MGI:1860493
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho guanine nucleotide exchange factor (GEF7) transcript_id : NM_017402.3

name	1700018L24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037418 GeneID:75528 MGI:1922778
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700018L24 gene transcript_id : NM_029326.1

name	LOC100040155 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258358 GeneID:100040155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040155 transcript_id : XM_001474174.1

name	LOC100040175 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258360 GeneID:100040175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040175 transcript_id : XM_001474211.1

name	EG434280 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701497 GeneID:434280 MGI:3645522
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG434280 transcript_id : NM_001013812.1

name	EG434279 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383033 GeneID:434279 MGI:3647910
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, EG434279 transcript_id : XM_489223.3

name	Sox1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606321 GeneID:20664 MGI:98357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SRY-box containing gene 1 transcript_id : NM_009233.2

name	1700094C09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361666 GeneID:78634 MGI:1925884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700094C09 gene transcript_id : NM_024279.2

name	Tubgcp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930566 GeneID:259279 MGI:2183752
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin, gamma complex associated protein 3 transcript_id : NM_198031.1

name	Atp11a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131089 GeneID:50770 MGI:1354735
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, class VI, type 11A transcript_id : NM_015804.2

name	LOC100040229 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258363 GeneID:100040229
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040229 transcript_id : XM_001474320.1

name	Mcf2l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46849759 GeneID:17207 MGI:103263
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mcf.2 transforming sequence-like transcript_id : NM_178076.2

name	Irs2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487073 GeneID:384783 MGI:109334
definition	GO_function : GO:0005158 - insulin receptor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0019901 - protein kinase binding [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007420 - brain development [Evidence IMP]; GO:0008283 - cell proliferation [Evidence IMP]; GO:0008286 - insulin receptor signaling pathway [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : insulin receptor substrate 2 protein_id : NP_001074681.1

name	Col4a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859528 GeneID:12826 MGI:88454
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005581 - collagen [Evidence IEA]; GO:0005587 - collagen type IV [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Del(8)Bru44H; retinal anterior wiring; alpha1(IV) collagen product : procollagen, type IV, alpha 1 protein_id : NP_034061.1

name	Col4a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:36031080 GeneID:12827 MGI:88455
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005581 - collagen [Evidence IEA]; GO:0005587 - collagen type IV [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : procollagen, type IV, alpha 2 protein_id : NP_034062.2

name	Rab20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45593126 CCDS:CCDS22095.1 GeneID:19332 MGI:102789
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB20, member RAS oncogene family protein_id : NP_035357.1

name	0710008K08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312234 CCDS:CCDS22096.1 GeneID:69225 MGI:1913353
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC69225 protein_id : NP_081271.1

name	Cars2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149258356 GeneID:71941 MGI:1919191
definition	codon_start : 1 product : cysteinyl-tRNA synthetase 2 (mitochondrial)(putative) protein_id : XP_001474165.1

name	Ing1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29336057 CCDS:CCDS22097.1 GeneID:26356 MGI:1349481
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : inhibitor of growth family, member 1 protein_id : NP_036049.2

name	Ankrd10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527192 CCDS:CCDS22098.1 GeneID:102334 MGI:1921840
definition	codon_start : 1 exception : mismatches in translation product : ankyrin repeat domain 10 protein_id : NP_598732.1

name	1700016D06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313198 GeneID:76413 MGI:1923663
definition	codon_start : 1 note : GC14 product : hypothetical protein LOC76413 protein_id : NP_077233.1

name	EG665271 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383026 GeneID:665271 MGI:3645249
definition	codon_start : 1 product : similar to serine/threonine rich low complexity protein protein_id : XP_984113.1

name	Arhgef7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980859 CCDS:CCDS22099.1 GeneID:54126 MGI:1860493
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : Pak interacting exchange factor; Pak3 binding protein product : Rho guanine nucleotide exchange factor (GEF7) protein_id : NP_059098.2

name	1700018L24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037419 CCDS:CCDS22100.1 GeneID:75528 MGI:1922778
definition	codon_start : 1 product : hypothetical protein LOC75528 protein_id : NP_083602.1

name	LOC100040155 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258359 GeneID:100040155
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474224.1

name	LOC100040175 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258361 GeneID:100040175
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474261.1

name	EG434279 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51763938 GeneID:434279 MGI:3647910
definition	codon_start : 1 product : hypothetical protein protein_id : XP_489223.1

name	Sox1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606322 GeneID:20664 MGI:98357
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0030900 - forebrain development [Evidence IMP]; GO:0001764 - neuron migration [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : SRY (sex determining region Y)-box 1 protein_id : NP_033259.2

name	EG434280 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701498 GeneID:434280 MGI:3645522
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC434280 protein_id : NP_001013834.1

name	1700094C09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21735473 GeneID:78634 MGI:1925884
definition	codon_start : 1 product : hypothetical protein LOC78634 protein_id : NP_077241.1

name	Tubgcp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930567 CCDS:CCDS22103.1 GeneID:259279 MGI:2183752
definition	GO_component : GO:0005874 - microtubule [Evidence IEA]; GO:0005815 - microtubule organizing center [Evidence IEA]; GO:0000922 - spindle pole [Evidence IEA] GO_process : GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 product : tubulin, gamma complex associated protein 3 protein_id : NP_932148.1

name	Atp11a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7656914 GeneID:50770 MGI:1354735
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : ATPase, class 1, member h; ATPase 11A, p type; ATPase 11A, class VI product : ATPase, class VI, type 11A protein_id : NP_056619.1

name	LOC100040229 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258364 GeneID:100040229
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474370.1

name	Mcf2l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46559374 GeneID:17207 MGI:103263
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0016020 - membrane [Evidence IDA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0005545 - phosphatidylinositol binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IDA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]; GO:0007266 - Rho protein signal transduction [Evidence IDA] codon_start : 1 note : exchange factor for RhoA and Cdc42; guanine nucleotide exchange factor OSTIII product : mcf.2 transforming sequence-like protein_id : NP_835177.1

name	LOC665363 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258357 GeneID:665363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 687 ESTs, 7 Proteins product : similar to ribosomal protein S3A pseudo : _no_value transcript_id : XR_031600.1

name	LOC624710 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258377 GeneID:624710
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to lipotransin pseudo : _no_value transcript_id : XR_031995.1

name	LOC665373 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258378 GeneID:665373
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 73 ESTs, 5 Proteins product : similar to ribosomal protein L26 pseudo : _no_value transcript_id : XR_032000.1

clone name	MSMg01-441M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141A21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-072M17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-159D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192B24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-306J23.T7 (MSMg01no306_j23.b1)	MSMg01-306J23.TJ (MSMg01no306_j23.g1)
ACC	AG431228	AG431229
length	703	758
length of high quality (start - end)	54 (241 - 294)	315 (78 - 392)
definition	CHROMAT_FILE: MSMg01no306_j23.b1 PHD_FILE: MSMg01no306_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:28 2005	CHROMAT_FILE: MSMg01no306_j23.g1 PHD_FILE: MSMg01no306_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:28 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCAAATTGCGGCGCAAACGAGGACAATTTCGAACCGCCGGAANCCCAGNG CTTGCGNAACGGGGCNCNNNGGNNCAGANNCCAGNCCAGGACCNNNCCTT TTTGGCAAGAAAAGAGACGACACGGGGNNNCAGCCCACNNCAGACGGCAA CNNCNCAGGNCACACCNAGGGGAAAGCAGAGAGGNNCNACAGGAGAGCNC ACACGGAGNCGGACGGAGANACANACNNGGNNTTGTTTAATGTCCTGGCT AGTTTTATGTCAACTTGATACACAGTAGGGAAGAAAGGAATCGAAANATT TTTTTTTTTTTTANCCACAGGAAGGCANGGCCGGAAGCAGGGATTGTTAT TCCCCCCCCCAGCCCATTGTGGGTGGAGCCATTCTTGGACTGGNGGNCCT GGGTTCCAAAATAAAACAAGCTGAGCAAGCCGCAGGGAGCAAACCAGTAA GCAGCATCCCTCTGTGGCCTCTGCATCAGGATCCTGCCCTGTTAAAAGTT CCTGGCTAGTCCTTCACGGATGGACTACAATGTGGAAGTGCAAGCTTAAA TAAGTCTAAACGCCTTTGTTCATAGTGTTTTTATACAACGGTAGACTTAG CTAGAACTGTGAGCCACTCAAACTCACCTCAGAAAAGCCTTATTTTTTTT TTTTTAGGCCCCCACGCGAACGCCCCGATGAGAAACCCCGGGGCCAGTGC CAC	GCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGAGCCCCATT TTTTAATGGGGTTATTTGATTTTCTGGGGTCCAGCTTCTTGAGCTCTTTG TATATATTGGATATTAGTCCCCTATCAGATTTGAATCCATTTCCTAAGGA AGAGGAATGCAGGCCCTACTTCAGGGGCCTCACAGCCCTACAGAGAAAAA GGTCCTGAGATAGGTGAGAGTGGCAGGGGTGTGATACCAACCCTCACCTG AAGAGGGAGCAGTATTGCCTTGTGGGGATGTGAAGAAACTCTGAGGAGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGTNNNNN NNNNNNTNTTTTTNTTTTTTTNNCCCCTTGGTTTTTTTTTTTTTTGTGGT TTTTTTTTGGGTTTGTTTTTTTTTTTTTTTTTGTTTGTGTGTNGTTGTTG TTGTTCGTTTTTTGGTTTTTTCTTTTTCTGGTTGTTGTTTTTGCGCTTCN TCCGCTTTTTTTTGTTTTTTCCCCTTTTTTGTTCTGTTTTGTGTCTTCTT TTTTCTCGGCGCTTCCTTTTTCTCGCTTTTCCTCTCGCTTCTTTCTTCTG TTTCCTTTTTGTCTCTCCTTCCTTGTTTTGCTTTTTTTTCTTTCTCGCCC CTTNCTTCTCTGCCTCCTCTCCCTTCCTTTCCTCCTTTTTTTTTCTTCTT TTTTCTCN
quality values	Open. Hide. 8 10 10 8 10 8 8 8 15 16 20 23 19 15 14 14 25 28 17 17 11 11 10 10 9 9 6 8 6 6 6 6 6 6 6 6 9 9 14 19 19 3 0 3 10 10 17 3 0 3 9 6 8 8 6 3 0 3 6 6 6 6 8 7 3 0 3 0 0 0 3 3 0 0 3 11 11 3 0 0 3 10 10 3 0 3 8 7 9 9 7 14 3 0 0 0 3 21 11 12 8 8 7 7 7 9 9 9 9 15 12 13 13 18 10 10 9 9 9 9 19 15 9 9 7 7 3 0 0 0 3 23 19 8 8 8 17 3 0 0 3 25 19 22 9 9 9 9 14 27 3 0 0 3 0 3 7 7 3 0 3 27 27 27 27 3 0 3 29 27 59 47 47 50 50 50 47 47 39 29 24 7 7 3 0 0 3 0 3 29 27 37 37 37 37 23 25 3 0 3 27 19 22 9 9 7 7 3 0 3 7 7 9 9 9 9 7 14 3 0 3 23 3 0 3 3 0 0 3 3 0 0 3 6 6 6 12 11 11 11 11 23 23 46 46 59 48 48 48 46 57 43 43 41 43 43 57 57 48 48 48 48 48 57 59 57 57 57 48 48 57 48 40 40 30 30 30 39 39 57 57 48 48 48 59 59 59 30 30 15 15 27 27 27 23 3 0 3 12 9 9 10 15 19 19 23 35 26 26 20 12 12 3 0 3 27 27 59 47 46 46 46 31 30 22 18 3 0 3 6 6 6 6 6 9 11 11 11 16 9 9 9 9 9 9 9 9 9 9 9 12 10 10 9 9 9 9 13 13 13 13 13 27 27 41 46 32 32 32 39 48 48 48 48 48 47 47 39 35 35 47 37 59 48 48 47 59 46 43 47 27 23 3 0 3 3 0 3 23 23 31 30 22 12 11 12 12 16 14 14 11 11 11 21 13 10 10 10 21 18 25 23 34 28 32 28 15 15 12 12 12 12 12 16 12 20 14 19 11 13 11 13 14 27 23 12 12 16 19 17 20 28 28 28 28 31 37 39 43 48 57 43 43 33 22 14 14 12 12 19 27 37 30 30 25 21 21 13 17 11 11 11 23 23 39 39 41 41 40 43 26 24 24 24 22 28 20 18 20 20 20 19 17 18 12 13 9 13 10 9 9 9 15 19 14 7 7 8 10 12 11 12 13 15 20 24 25 18 18 18 22 21 21 26 19 15 15 9 9 9 9 9 14 14 18 16 14 13 9 11 10 9 8 8 8 8 10 12 16 10 10 8 7 8 7 7 10 8 10 13 12 12 12 19 15 19 12 13 13 11 11 10 8 9 9 10 9 10 10 10 10 10 11 13 13 11 11 11 18 10 10 10 10 8 8 8 12 13 10 8 6 6 8 8 10 11 11 19 14 16 13 13 10 10 10 18 10 10 10 13 13 22 21 21 12 11 11 16 10 10 9 8 7 7 8 14 22 44 22 22 19 17 13 10 10 9 9 9 13 15 13 10 8 8 8 10 10 9 9 8 8 8 8 10 11 9 10 10 10 11 15 18 19 18 12 11 8 8 8 8 9 8 9 9 9 13 10 10 9 10 10 10 10	Open. Hide. 9 9 9 9 12 10 6 6 8 21 25 37 37 37 41 48 48 53 53 53 57 57 53 48 48 48 50 50 47 41 25 25 9 9 9 9 8 7 8 8 8 8 8 8 8 10 10 16 25 19 33 33 33 33 36 53 53 53 50 50 50 39 33 19 19 9 12 9 9 10 9 9 14 19 23 31 31 59 59 59 48 53 47 53 53 53 53 57 59 59 59 57 59 59 50 50 50 50 50 51 68 68 68 57 54 54 54 54 54 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 43 43 43 44 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 50 50 50 50 50 50 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 59 59 57 36 36 36 37 40 42 42 32 42 42 57 57 68 68 68 59 59 57 57 57 57 57 57 59 59 59 59 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 39 39 37 39 37 39 39 43 43 46 47 47 39 37 23 23 3 0 3 3 0 0 0 0 0 0 0 0 0 0 0 3 0 3 10 8 7 3 0 3 8 10 10 19 21 3 0 0 3 7 7 7 6 8 8 6 6 8 8 9 9 7 9 9 9 12 10 10 10 6 6 8 6 6 6 8 8 10 14 13 19 10 8 6 6 6 6 6 6 6 6 7 6 6 6 11 12 19 14 14 23 21 21 19 9 9 9 11 11 13 8 8 8 6 6 6 3 0 3 9 10 9 6 8 6 6 6 6 6 6 6 9 10 15 17 17 13 9 7 8 8 8 10 10 8 8 10 8 10 8 10 6 6 8 8 9 10 10 13 10 10 10 10 10 13 9 8 8 8 8 8 12 10 3 0 3 8 8 6 6 8 6 10 13 19 17 16 9 8 8 8 8 8 9 12 12 12 12 12 12 12 15 10 10 8 8 8 8 10 10 10 8 8 9 13 10 10 10 10 10 10 8 8 8 10 16 16 12 9 9 8 8 8 8 8 8 10 11 11 10 10 10 13 14 14 8 10 8 8 8 9 10 12 10 8 8 8 8 9 8 8 8 8 8 8 8 12 15 10 10 8 8 8 8 8 8 8 8 12 19 19 20 23 12 10 8 8 8 8 8 8 8 11 11 11 11 10 8 8 6 6 10 8 9 12 16 12 12 11 15 12 15 15 9 9 9 10 9 9 8 6 6 6 8 8 10 8 3 0 3 10 10 15 18 12 10 10 8 8 6 6 8 8 10 10 10 14 10 10 8 8 8 12 17 16 10 10 8 10 8 8 8 12 23 19 24 13 13 13 11 10 12 10 8 8 8 10 11 10 10 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no306_j23.g1 MSMg01no306_j23.g1 CHROMAT_FILE:
MSMg01no306_j23.g1 PHD_FILE: MSMg01no306_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:28 2005
         (315 letters)



>mm_chr8_11981227_11981941
          Length = 715

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctttgagccccattttttaatggggttatttgattttctggggtccagctt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttgtttagctttgagcccca-tttttaatggggttatttgattttctggggtccagctt 260

                                                                       
Query: 61  cttgagctctttgtatatattggatattagtcccctatcagatttgaatccatttcctaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 cttgagctctttgtatatattggatattagtcccctatcagatttgaatccatttcttaa 320

                                                                       
Query: 121 ggaagaggaatgcaggccctacttcaggggcctcacagccctacagagaaaaaggtcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ggaagaggaatgcaggccctacttcaggggcctcacagccctacagagaaaaaagtcctg 380

                                                                       
Query: 181 agataggtgagagtggcaggggtgtgataccaaccctcacctgaagagggagcagtattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataggtgagagtggcaggggtgtgataccaaccctcacctgaagagggagcagtattg 440

                                                                       
Query: 241 ccttgtggggatgtgaagaaactctgaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgtggggatgtgaagaaactctgaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information