BAC Information

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BAC

Clone NameMSMg01-306J24
Chromosome8 (Build37)
Map Location 93,061,472 - 93,278,840
singlet/doubletdoublet
Overlap geneLOC100041133
Upstream geneTox3
Downstream geneChd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306J24.T7 (MSMg01no306_j24.b1)MSMg01-306J24.TJ (MSMg01no306_j24.g1)
ACCAG431230AG431231
length750772
length of high quality
(start - end)		528 (38 - 565)698 (75 - 772)
definitionCHROMAT_FILE: MSMg01no306_j24.b1 PHD_FILE: MSMg01no306_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:28 2005CHROMAT_FILE: MSMg01no306_j24.g1 PHD_FILE: MSMg01no306_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,061,472 - 93,061,993)(93,278,376 - 93,278,840)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAG
GTGCAAGGACTCATGGGAACTAGATAAATGGAATCTTTGCCCTCATGGGA
GTTACTGTCTTAGTGACTGACATCAACAGCTATTGAAAAATAACTCTAAA
GCAGCAGTAGCAAGAAGGGAGGTGTATGCATGCCAGATCTATACTACAGA
AGACTTAAGTTGGTGCCAACAGTGCAGAAATACAAGCAGCACAAATAAGA
TACAGATGAATTAATTAGTCAAAGACAGTTGATTCGATCTACATTTGAGT
AATTTCAAGACTGAGGCAAGATTTTTCTGCAGTTATGGGCAGTATAATAT
GGTTGGGGATATTCGGTTACTCGACCAGATACTGATGATATTTCAAAGGT
AATAAAGCAGGTGTGATAGTACACACCCTTAATCCCAGCACTCCTGAGGC
AGAGCCAGGTGGATTTGGTGAGTTCAAAGCCAGCCTAGTCTACATACAGA
GTTGACAGGATTACTATACTATTTTGGGATCTTATTTGTTTGTTTGTTTG
TTTGTTTGGTTGGNTGGTTGGGTTGGTTTTGNNTNNNNNCNCCCNCCCNC
CCCCCCTTTCCCCCCTCTCTCCTTCTTCTNCCCCCTTTTCCCCTTTCTCC
CCCTCTTTTTTTCTCTTTTTTTTTTCTTTTTTCCCCCCCCCTTCTTTTTC
CCCTCTTCTTCCTCTCTCTTCCCTCTTTTTTTCTCCCCCTCTCCCTCCTT


CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATGTTTATGAATTTATTAAATCAG
ATCACCCTGTGAGTTCTGTTCCTGTGGAGAACCGCGACTGATAAGCTGGC
TTTTTTAATGTAAAGGATCAGGTTCACCAGATTATGTGAGTCTTGAGTAG
ATGTGAGAAGGGAGGCACTATTCTATGCTAAATGTGGACAGAAGCATTTA
ACTTTGGTGCCCAGTGTAAGAGAGAAACATGAACATTAGGGAGAGCAAAT
GCCAATTTTGAAGAGACAGGATTTGAGAGGATGGGGTCAACTCATTGCTC
TCTCCCAGGGCACAACTCCAGGAGGCATCCCCAGGGAATCCTGCAGCTCC
CGTCAAGCCAGTGGAAGAAGGTAGGCTAACTGCAGAAATTCACCCTTCAT
CCTGTTCCTCCAGGTCCAGTTTCCCAGTCTCGTCCCCAGCTCTGGAGCTG
AGAACCTGCTGTGGAACCCATCTCCTTTCTGCCCCCAGCTCCAGCAGACC
CCACAGCAGACTTCACAGCAGATCCCACATCAGGTCCCACCACAGACCCC
ACAGCAGACCCCACAGCAGGTCATACAGCAGATCCCACAGCAGATCCCAC
TGCAGATCACACAGCAGATCATACAGCAGGTCACACAGCAGATCACACTG
CAGACCACACAGCAGATCACACTGCAGATCACGTTCAACCTTCCTCCCCA
CACATCCTGTTTTCTCAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_j24.b1 MSMg01no306_j24.b1 CHROMAT_FILE:
MSMg01no306_j24.b1 PHD_FILE: MSMg01no306_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:28 2005
         (528 letters)



>mm_chr8_93061268_93062195
          Length = 928

 Score =  986 bits (510), Expect = 0.0
 Identities = 519/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggtgcaaggactcatgggaactagataaatggaatctttgccctcatgggag 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggtgcaaggaatcatgggaactagataaatggaatctttgccctcatgggag 264

                                                                       
Query: 65  ttactgtcttagtgactgacatcaacagctattgaaaaataactctaaagcagcagtagc 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 ttactgtcttagtgactgacatcaacagctattgaaaactaactctaaagcagcagtagc 324

                                                                       
Query: 125 aagaagggaggtgtatgcatgccagatctatactacagaagacttaagttggtgccaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaagggaggtgtatgcatgccagatctatactacagaagacttaagttggtgccaaca 384

                                                                       
Query: 185 gtgcagaaatacaagcagcacaaataagatacagatgaattaattagtcaaagacagttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgcagaaatacaagcagcacaaataagatacagatgaattaattagtcaaagacagttg 444

                                                                       
Query: 245 attcgatctacatttgagtaatttcaagactgaggcaagatttttctgcagttatgggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcgatctacatttgagtaatttcaagactgaggcaagatttttctgcagttatgggca 504

                                                                       
Query: 305 gtataatatggttggggatattcggttactcgaccagatactgatgatatttcaaaggta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtataatatggttggggatattcggttactcgaccagatactgatgatatttcaaaggta 564

                                                                       
Query: 365 ataaagcaggtgtgatagtacacacccttaatcccagcactcctgaggcagagccaggtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataaagcaggtgtgatagtacacacccttaatcccagcactcctgaggcagagccaggtg 624

                                                                       
Query: 425 gatttggtgagttcaaagccagcctagtctacatacagagttgacaggattactatacta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatttggtgagttcaaagccagcctagtctacatacagagttgacaggattactatacta 684

                                                     
Query: 485 ttttgggatcttatttgtttgtttgtttgtttgtttggttgg 526
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 ttttgggatcttatttgtttgtttgtttgtttggttggttgg 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_j24.g1 MSMg01no306_j24.g1 CHROMAT_FILE:
MSMg01no306_j24.g1 PHD_FILE: MSMg01no306_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:28 2005
         (698 letters)



>mm_chr8_93278376_93279473
          Length = 1098

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgtttatgaatttattaaatcagatcaccctgtgagttctgttcctgtggagaaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atatgtttatgaatttattaaatcagatcaccctgtgagttctgttcctgtggagaaccg 406

                                                                       
Query: 61  cgactgataagctggcttttttaatgtaaaggatcaggttcaccagattatgtgagtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cgactgataagctggcttttttaatgtaaaggatcaggttcaccagattatgtgagtctt 346

                                                                       
Query: 121 gagtagatgtgagaagggaggcactattctatgctaaatgtggacagaagcatttaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagtagatgtgagaagggaggcactattctatgctaaatgtggacagaagcatttaactt 286

                                                                       
Query: 181 tggtgcccagtgtaagagagaaacatgaacattagggagagcaaatgccaattttgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tggtgcccagtgtaagagagaaacatgaacattagggagagcaaatgccaattttgaaga 226

                                                                       
Query: 241 gacaggatttgagaggatggggtcaactcattgctctctcccagggcacaactccaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gacaggatttgagaggatggggtcaactcattgctctctcccagggcacaactccaggag 166

                                                                       
Query: 301 gcatccccagggaatcctgcagctcccgtcaagccagtggaagaaggtaggctaactgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gcatccccagggaatcctgcagctcccgtcaagccagtggaagaaggtaggctaactgca 106

                                                                       
Query: 361 gaaattcacccttcatcctgttcctccaggtccagtttcccagtctcgtccccagctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gaaattcacccttcatcctgttcctccaggtccagtttcccagtctcgtccccagctctg 46

                                                        
Query: 421 gagctgagaacctgctgtggaacccatctcctttctgcccccagc 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  gagctgagaacctgctgtggaacccatctcctttctgcccccagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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