BAC Information

Click to search

BAC

Clone NameMSMg01-306O14
Chromosome8 (Build37)
Map Location 62,610,877 - 62,611,163
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306O14.T7 (MSMg01no306_o14.b1)MSMg01-306O14.TJ (MSMg01no306_o14.g1)
ACCAG431433AG431434
length746746
length of high quality
(start - end)
689 (53 - 741)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no306_o14.b1 PHD_FILE: MSMg01no306_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:49 2005CHROMAT_FILE: MSMg01no306_o14.g1 PHD_FILE: MSMg01no306_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGTACTGTCACATCCAACAGGAATTATTGGAACAATC
TTTAAATGAATCATTTGAAAGAATATGCACCCAGGGGGAATAAACACAGA
CTGTAGCAGGTGAATAATTCTGATTTACAATGGTTCTATTGAATCCAACA
AATATTTCAGTGATAATTACGAATGATTGGCCGGACCCATCCTGTTTTAG
CATGGTGCCAGTGGTGATACCAGTAAAAGGTGCCTTTCTGCCTGTACCAC
CCCAGATAAAGGCCAAGGTGTTAAGATCTGTATAGCTACCATTAACTCCA
CAAAGCAGCCACTTATGGAAAGGATCCATTCTACGGTCCTGTAGGAAGAG
TCCCTGCTTCATAGCCAGTTCTTCCCCTGGATCTACCATCATATTGGGGG
AAAAGGAGAAGGTTCTACCCTGATCTGCCCAGCGAGTAATGGAAGATTGA
CAATCAGACCAGGGTGAGATCTGCCCCTCATTCTCTGAACTACAATGGGG
GGCTATTCTGGGTTGACGAGGACGTTCCTTGTTTGTAAAATTAGGTGAAA
GGGAGGTACCAGATTGCTTCTTGCAAAAAAGTGTAATGATAATTTGTCCT
ATTTCCCCCTACACTCTCCTGTTGAATCTTCACCCAGCCTACACGTTTTC
CATTAAACCACCCCAAGGCTCGGCTTGTGAGCTGAATGCAGTCTCC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCGATGAAAGGACTACACTTATT
TGTCTGTGGTTAGAAAGAAGTAGCTTAAGATGGTAGGGAGAAATTATGCT
GAGTCAGTGAAGCTAAGATATGATTTGGATGATAACAAGTAGAAAGGGGT
GCACTTGGGGATGGGGAGATAGCTTAGGGGGTTAACCATACTTACTGTGT
GAACAGGAGAACCCAAGATTTGGTTTCCAGACCATGTGTAAAAATCAAGA
GTGGCTGTAGGCAACATTTAACCAAGGTGCCGGGCAGGGAGGGATGTATC
ACTACAGCTTGTTTATTTGGTACCCCCCCCCCACATCAAACAGAAAACTA
AGTTCATGGCATGTAAGATACCCTATCTCAAGGGGATTAAAAAGATAGAG
GAGAAAGGATCAGAGAAAAAGGGCAAAAAGAAGAAGGAGCAGGATAAAAG
TGAGGCCAAAGAGGAGAAAGAGGAAGAGAACAGAAAACACTCAAAACACA
GAAGGAACATATTCATTACTCCTTCTTCCTCAGTCATGCCTGTCTCTCCA
CTGTGTGCCTCTCTGTGCTTTATTCTCTTCCTTCCACTTTTCTTATTCAG
AGCAAACATGATTCATGATCCTGTGGGTTCATAGTAACTCAGGAGGCAGA
AGGGTAAGTTCACGAGACACTGAACCTGGCTTTCCTGGTTCTAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_o14.g1 MSMg01no306_o14.g1 CHROMAT_FILE:
MSMg01no306_o14.g1 PHD_FILE: MSMg01no306_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:49 2005
         (287 letters)



>mm_chr8_62610677_62611363
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgatgaaaggactacacttatttgtctgtggttagaaagaagtagcttaagatggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctcgatgaaaggactacacttatttgtctgtggttagaaagaagtagcttaagatggtag 428

                                                                       
Query: 61  ggagaaattatgctgagtcagtgaagctaagatatgatttggatgataacaagtagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggagaaattatgctgagtcagtgaagctaagatatgatttggatgataacaagtagaaag 368

                                                                       
Query: 121 gggtgcacttggggatggggagatagcttagggggttaaccatacttactgtgtgaacag 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggtgcacttggggatgggtagatagcttagggggttaaccatacttactgtgtgaacag 308

                                                                       
Query: 181 gagaacccaagatttggtttccagaccatgtgtaaaaatcaagagtggctgtaggcaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagaacccaagatttggtttccagaccatgtgtaaaaatcaagagtggctgtaggcaaca 248

                                                          
Query: 241 tttaaccaaggtgccgggcagggagggatgtatcactacagcttgtt 287
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttaaccaatgtgccgggcagggagggatgtatcactacagcttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)