BAC Information

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BAC

Clone NameMSMg01-307M22
Chromosome8 (Build37)
Map Location 84,407,874 - 84,408,547
singlet/doubletsinglet
Overlap geneInpp4b
Upstream geneLOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307M22.T7 (MSMg01no307_m22.b1)MSMg01-307M22.TJ (MSMg01no307_m22.g1)
ACCAG432060AG432061
length751749
length of high quality
(start - end)
685 (67 - 751)674 (76 - 749)
definitionCHROMAT_FILE: MSMg01no307_m22.b1 PHD_FILE: MSMg01no307_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:57 2005CHROMAT_FILE: MSMg01no307_m22.g1 PHD_FILE: MSMg01no307_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACAACTCTCTTCAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAG
TCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAA
GAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACA
GGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACC
TAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTG
GAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAG
CAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCA
TAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATC
CTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCT
ACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAG
CAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAA
GAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGA
CCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGCAC
TAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACA
T
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAATATGGTATAATGCTAACAAC
ACGATTTCCTGTGCATTGAGCTGCTCTGTTTAAAGGAAGTAACAATCCAT
GGATTTCAGAAGTAAATGTGTTCTGGATGGATTACAAAACAGGTGACACT
TACCTTAGTATTTCATTGACTTTTTACTTGCAGAACCTCAGATGGTGGCA
AAGTGGTCGGCACCATAGAAGTCAGCCTCGTGAAGATGGGAGAGATTGAG
GATGGGGACACCGACCACATCACAACAGATGTGCAGGGACAAAAGGTAGG
ACTGCAGTCAGTTCATAGCATAGATTAAATTGGAAATGATAAGCTTTGCC
AGACGCCTGTATTGCCAACACCCTGTGGGGCTTGAAATCTCATTATTCAA
AAGCTAAATGAGAAATCATCCCTGGAATTGAAGTACAATATGTGCATTTC
CTCCTGGAACCAGAAGGCCCATTTACTTGGAGCTGTGTGAAGCTTGGTGC
CATTCAGAAACACCTTTCTCCACTGTGCCAGCTCTCATGTTGGTATCATC
TCTCCTCAGTTGGAACAAAAGTATTGATCACTGTTGCGTTCTGCCATAAT
TACCCTGCATGAGACGTAGGGAGGATTCTGGGAGTGTGGCTGCCAAGAGT
AGCCCTCTCTTATTCCCAGAGACATCTTTGGAAGAGATGCAATTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_m22.g1 MSMg01no307_m22.g1 CHROMAT_FILE:
MSMg01no307_m22.g1 PHD_FILE: MSMg01no307_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:57 2005
         (674 letters)



>mm_chr8_84407674_84408747
          Length = 1074

 Score = 1288 bits (666), Expect = 0.0
 Identities = 672/674 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatatggtataatgctaacaacacgatttcctgtgcattgagctgctctgtttaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaatatggtataatgctaacaacacgatttcctgtgcattgagctgctctgtttaaag 260

                                                                       
Query: 61  gaagtaacaatccatggatttcagaagtaaatgtgttctggatggattacaaaacaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtaacaatccatggatttcagaagtaaatgtgttctggatggattacaaaacaggtg 320

                                                                       
Query: 121 acacttaccttagtatttcattgactttttacttgcagaacctcagatggtggcaaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacttaccttagtatttcattgactttttacttgcagaacctcagatggtggcaaagtg 380

                                                                       
Query: 181 gtcggcaccatagaagtcagcctcgtgaagatgggagagattgaggatggggacaccgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcggcaccatagaagtcagcctcgtgaagatgggagagattgaggatggggacaccgac 440

                                                                       
Query: 241 cacatcacaacagatgtgcagggacaaaaggtaggactgcagtcagttcatagcatagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacatcacaacagatgtgcagggacaaaaggtaggactgcagtcagttcatagcatagat 500

                                                                       
Query: 301 taaattggaaatgataagctttgccagacgcctgtattgccaacaccctgtggggcttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaattggaaatgataagctttgccagacgcctgtattgccaacaccctgtggggcttga 560

                                                                       
Query: 361 aatctcattattcaaaagctaaatgagaaatcatccctggaattgaagtacaatatgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctcattattcaaaagctaaatgagaaatcatccctggaattgaagtacaatatgtgc 620

                                                                       
Query: 421 atttcctcctggaaccagaaggcccatttacttggagctgtgtgaagcttggtgccattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 atttcctcctggaaccagaaggcccatttacttggagctgtgtgaagctcggtgccattc 680

                                                                       
Query: 481 agaaacacctttctccactgtgccagctctcatgttggtatcatctctcctcagttggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaacacctttctccactgtgccagctctcatgttggtatcatctctcctcagttggaa 740

                                                                       
Query: 541 caaaagtattgatcactgttgcgttctgccataattaccctgcatgagacgtagggagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 caaaagtattgatcactgttgcgttctgccataattaccctgcatgagacgcagggagga 800

                                                                       
Query: 601 ttctgggagtgtggctgccaagagtagccctctcttattcccagagacatctttggaaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctgggagtgtggctgccaagagtagccctctcttattcccagagacatctttggaaga 860

                         
Query: 661 gatgcaattttaat 674
           ||||||||||||||
Sbjct: 861 gatgcaattttaat 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)