Query= MSMg01no308_b04.b1 MSMg01no308_b04.b1 CHROMAT_FILE:
MSMg01no308_b04.b1 PHD_FILE: MSMg01no308_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:18 2005
(249 letters)
>mm_chr8_89188684_89189326
Length = 643
Score = 398 bits (206), Expect = e-115
Identities = 235/248 (94%), Gaps = 6/248 (2%)
Strand = Plus / Minus
Query: 1 caaatcattactatattttatataacacaatgagaaactgacttcttaccacaccaatga 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 caaatcattactatattttatataacacaatgagaaactgacttcttaaaacaccaatga 383
Query: 61 acctcaaaaatggttaacctgatgcaatatctaatttaataattagtcttaatcatttgg 120
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 acctcaaaaatggttaacctcatgtaatatctaatttaataattagtcttaatcatttgg 323
Query: 121 tttaactttttgttttgtgtgtatggacatgtgcatgtacatcccaccatcctcacggag 180
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 322 tttaactttttgttttgtgtgtatggacatgtg------catcccactatcctcacggag 269
Query: 181 gtgatacggcagctttcgtaactcatcctttcatcacatgggtctgggtggcagcgggca 240
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtgagacggcagcttgcgtaactcatcctttcatcacatgggtctgggtggcagcgggca 209
Query: 241 tctttacc 248
||||||||
Sbjct: 208 tctttacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 643
Length adjustment: 9
Effective length of query: 240
Effective length of database: 634
Effective search space: 152160
Effective search space used: 152160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no308_b04.g1 MSMg01no308_b04.g1 CHROMAT_FILE:
MSMg01no308_b04.g1 PHD_FILE: MSMg01no308_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:18 2005
(216 letters)
>mm_chr8_89011698_89012313
Length = 616
Score = 387 bits (200), Expect = e-112
Identities = 212/216 (98%)
Strand = Plus / Plus
Query: 1 acactccattcaacttgagctgctgtgacagaattaaccctcctgctttgagtctgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactccattcaacttgagctgctgtgacagaattaaccctcctgctttgagtctgttgg 260
Query: 61 aggaagtggtaccaaccccctcacactgcgatactgacaggaaaagatgctttagaaatg 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagtggtaccaaccccctcacacttcgatactgacaggaaaagatgctttagaaatg 320
Query: 121 agtgattagcgggagagtcaacatctgagagaaatggaaggtggcaggggacctttcctc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgattagtgggagagtcaacatctgagagaaatggaaggtggcaggggacctttcctc 380
Query: 181 aaccaggcagctaaagtaagactgattccaggcctg 216
|||||| ||||||||| |||||||||||||||||||
Sbjct: 381 aaccagtcagctaaagcaagactgattccaggcctg 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space: 125649
Effective search space used: 125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
