BAC Information

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BAC

Clone NameMSMg01-308D06
Chromosome8 (Build37)
Map Location 55,745,556 - 55,913,775
singlet/doubletdoublet
Overlap geneWdr17
Upstream geneLOC100040107, Vegfc, Spcs3, Asb5, Spata4
Downstream geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308D06.T7 (MSMg01no308_d06.b1)MSMg01-308D06.TJ (MSMg01no308_d06.g1)
ACCAG432348AG432349
length711728
length of high quality
(start - end)
319 (36 - 354)344 (77 - 420)
definitionCHROMAT_FILE: MSMg01no308_d06.b1 PHD_FILE: MSMg01no308_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:28 2005CHROMAT_FILE: MSMg01no308_d06.g1 PHD_FILE: MSMg01no308_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,745,556 - 55,745,870)(55,913,436 - 55,913,775)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAG
GTCAACGGTGCTGGGATACAACTGGTTGGATATAGAAAAATGCTCTCCAA
TCTCCCTTATTGCAAGTGTGCTTCTAAAATAATTGTCGGGCATTTCATTT
GTGACTTAAGAATTCTCTTTTTATGAAGGTAATCATCGAATCTTATTCTT
AGTATTACTTTCTTGCTGTTTGAACTATTTATATTTTATTAAAATATATA
AACTTTGCTTTTTTATTTTTAGCTCCCAGGGTTGAGTTTATTGTTGATGA
AGTATATTCTCTCATACATAAGGTAACCAAAAGTCACAAGAGTTCATAGG
CTATTTTCTCCCGACGTCACAGGGTAAAGATAAAGTTTTTCATGGGGTCC
AAATTCAACCCCCACACTCATGAAATTCAATCTAATAGAATCCATGGCCA
CTTTAACCTCTTCTTAAATAATCCATATTTTCCAGTATTGGTCTCACTAT
TTTATCTTTTCTGTGTTTATTTCAGCCTACCAGCAATTTTCCTTTAGTAG
ATAAAACCCATAAATTTTGGTTTGAGTATACCGCGCTTGTGCACTGTACA
GAACTTACGGTTCTCAATTTGATCAGGTGTTTCAAATGCACCATTCCTTT
GCAGTATTTCTGAGGGAGCCAGCTGTCATCTTGTCCTTTAACCACGGACA
CTAAGTTCCAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGCACTATTACACTGACTGT
GCCTAGCACCCCTGTCTCTTCTTATCAAGGCCTGACCTCAGAAATACATT
CCTTGGAACCAATAAAGAAATAAGGGCATATCTGCTAGCTCCTGGAATCC
ACCAGCAATTTGATTTTAAAGGCAGGAGCAAGGTTAAGGTAAGCTGGCAG
CGCTCAACAGCACTCTTTCATTCTCCACATTGAGCACATCCCTGGAAAAG
GTGGCATTGTCCTCAGTGAGCTTTCAAAGTATATGGTTTCCTACATTAGG
ATAGTTGGATGATGATGGGAGGGGCCACATGAGGGGGCAGGAACTGGGAG
GAGAGGGAGACTGTGACCGACCTGCGAAAGTGAATAAATAACTAAATAAA
TACATAAATAAATAAATAAATAAATAAATAAATCAATACTTGGGCAGAAA
AGGATCATTGGGTGAAATAAAAACTTACCGATCTGTACATGAACTAACAC
TGTTACTATTATAATAATATGTAAACCCCAAAACGACAAATTGTTTAGTT
AAGACAAAAAAGGTAAAATTTTACTGCGAAAAAGCGTATCATTACGAAAA
GTGTAGGTGGGATGTTTATAGCCCTGACGTACCACCGCTTGATTGTTTTG
CATCATCCCCTTCCCTTATTTACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_d06.b1 MSMg01no308_d06.b1 CHROMAT_FILE:
MSMg01no308_d06.b1 PHD_FILE: MSMg01no308_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:28 2005
         (319 letters)



>mm_chr8_55745352_55746070
          Length = 719

 Score =  532 bits (275), Expect = e-155
 Identities = 305/315 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaggtcaacggtgctgggatacaactggttggatatagaaaaatgctctcca 64
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattccagaggccaacggtgctgggatacaattggttggatatagaaaaatgctctcca 264

                                                                       
Query: 65  atctcccttattgcaagtgtgcttctaaaataattgtcgggcatttcatttgtgacttaa 124
           ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 atctcccatattgtaagtgtgcttctaaaataattgtcaggcatttcatttgtgacttaa 324

                                                                       
Query: 125 gaattctctttttatgaaggtaatcatcgaatcttattcttagtattactttcttgctgt 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 gaattctctttttatgaaggtaatcatcgaatcttagtcttagtattactttcttgctgt 384

                                                                       
Query: 185 ttgaactatttatattttattaaaatatataaactttgcttttttatttttagctcccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 ttgaactatttatattttattaaaatatataaactttgcttttttattttttgctcccag 444

                                                                       
Query: 245 ggttgagtttattgttgatgaagtatattctctcatacataaggtaaccaaaagtcacaa 304
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 445 ggttgagtttattgttgatgaagtatattctcttagacataaggtaaccaaaagtcacaa 504

                          
Query: 305 gagttcataggctat 319
           |||||||||| ||||
Sbjct: 505 gagttcatagactat 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no308_d06.g1 MSMg01no308_d06.g1 CHROMAT_FILE:
MSMg01no308_d06.g1 PHD_FILE: MSMg01no308_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:28 2005
         (344 letters)



>mm_chr8_55913236_55913979
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaagcactattacactgactgtgcctagcacccctgtctcttcttatcaaggcctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attaagcactattacactgactgtgcctagcacccctgtctcttcttatcaaggcctgac 481

                                                                       
Query: 61  ctcagaaatacattccttggaaccaataaagaaataagggcatatctgctagctcctgga 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 ctcagaaatacattccttggaaccaataaagaaataagggcgtatctgctagctcctgga 421

                                                                       
Query: 121 atccaccagcaatttgattttaaaggcaggagcaaggttaaggtaagctggcagcgctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atccaccagcaatttgattttaaaggcaggagcaaggttaaggtaagctggcagcgctca 361

                                                                       
Query: 181 acagcactctttcattctccacattgagcacatccctggaaaaggtggcattgtcctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acagcactctttcattctccacattgagcacatccctggaaaaggtggcattgtcctcag 301

                                                                       
Query: 241 tgagctttcaaagtatatggtttcctacattaggatagttggatgatgatgggaggggcc 300
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 300 tgagctttcaaagtatatggtttcctacattaagatagttggatgatgaggggaggggcc 241

                                                   
Query: 301 acatgagggggcaggaactgggaggagagggagactgtga 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acatgagggggcaggaactgggaggagagggagactgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)