BAC Information

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BAC

Clone NameMSMg01-309J19
Chromosome8 (Build37)
Map Location 43,074,454 - 43,074,769
singlet/doubletsinglet
Overlap genenone
Upstream genePdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994
Downstream geneZfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309J19.T7 (MSMg01no309_j19.b1)MSMg01-309J19.TJ (MSMg01no309_j19.g1)
ACCAG433347AG433348
length758742
length of high quality
(start - end)
320 (48 - 367)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no309_j19.b1 PHD_FILE: MSMg01no309_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:15 2005CHROMAT_FILE: MSMg01no309_j19.g1 PHD_FILE: MSMg01no309_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGCAGGATGAGAAACTGGGGATTGTGAACCCATCTGGAGGT
ACACTAATCTCTTTGCAATGAAGCAAACCAGGAACAGGCTCTGAGGAGAC
ATCCACTCATCCACCCCAAACACATGCAAAGTCCTAATCCCCAGAAGTTT
CACATTCTGATTAATTACAGGTACAGGGGGTTTCATAGTCACTGACTACT
CTTTCGTTGGCCGCTGATTTGCTTTAACGATTCATGACATTTCATTGAGC
ACATGAGCTTTCTCACAGTCATTAAAAATAATAGCCTCTCTCCCTGACAG
CAAAGGAGGTTTATTCAGTGCTTTTCTTCCCATGCCCAGCCCCGGCTGTC
CTCCGTGCTAACTCACAGCCTACCCCCCGCAGAATAAAAATAATTATATC
GGAGGGGGGGGAGACTGATTCAGGATGTCCAAATGAGCACCTCCCTTCAA
ACTTGCTCTCTGGTGGACTGGCAATGTTGCTTTTATATAGTTCTAGAAGT
TTCTGGAAATTTCCCTTCTCATCATTTCAGCGCGTGAATCTGACCGGTAG
GTTCGCCTTTGAAAAGCTGTACTCCAGGAGACCAGGCTATCTCCGGAGAC
TTTTTAGTAAGTGGTTTCTTTTCACGCCTGGAGATTAAAGAGCAAGCCGC
CCATTATAATATTGGTATGTGTTGGTATAAAATATCCCTCGCTGATAAAA
CCTCGTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGAGAGAACCTGCACACACTTT
GAGTAACCTTCTTTAAGGGTGATTGATAACTGGTGGGAGGTTAGTGATCA
TGGAGCCTAGAGCCTAATTACAGTTTATTTCAGTTATATACAGCTTTAGT
CCCCTCAGTAGCCACACTTTGCCTACCTCTGTGTCTGTGTCCTTGTGATT
ATTAAGTGAAACCTTTGGGAATGTATTAACTTATCTGGTCACTAATCTCC
ACTAATCAAAAGGCTAAAAATGTTGTCAGATCTGAGGCATAAGCGGAGAT
GTCCTACCATCAAGTTTTTTACTTTCCCCCGCGCCCCCTACCAATGTATT
TGAAGACTGTCTTCTTGACTCCCCGGAGTTGTGACATCCACATGTAGGAT
ATGGTATGCATGTTTCTGCTCTCTCACAACACACACACACAAGCACACAC
ACACACAAGCACACACACACAAATCTTAAACACAGTTTTAAAAAGAAAAC
ATTATATAAATGGGTCACATTATAATTACTATCTTAAAGGATCTACTGAT
CTTACAGGAGCTACTGCTTAACACACGGAACAATAACCACACATTGCCAA
CAAAGTTACATTTTTACTTTCAGTTTTCTGTACAGGAGGCTGCTCAGGAT
TTAAGAAACACCGGTGAAGAAATTTCTCTTCTCTGTTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_j19.b1 MSMg01no309_j19.b1 CHROMAT_FILE:
MSMg01no309_j19.b1 PHD_FILE: MSMg01no309_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:15 2005
         (320 letters)



>mm_chr8_43074250_43074969
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagcaggatgagaaactggggattgtgaacccatctggaggtacactaatctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattctcagcaggatgagaaactggggattgtgaacccatctggaggtacactaatctc 461

                                                                       
Query: 65  tttgcaatgaagcaaaccaggaacaggctctgaggagacatccactcatccaccccaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttgcaatgaagcaaaccaggaacaggctctgaggagacatccactcatccaccccaaac 401

                                                                       
Query: 125 acatgcaaagtcctaatccccagaagtttcacattctgattaattacaggtacagggggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acatgcaaagtcctaatccccagaagtttcacattctgattaattacaggtacagggggt 341

                                                                       
Query: 185 ttcatagtcactgactactctttcgttggccgctgatttgctttaacgattcatgacatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttcatagtcactgactactctttcgttggccgctgatttgctttaacgattcatgacatt 281

                                                                       
Query: 245 tcattgagcacatgagctttctcacagtcattaaaaataatagcctctctccctgacagc 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 280 tcattgagcacatgagctttctcacagtcattaaaaataacagcctctctccctgacagc 221

                           
Query: 305 aaaggaggtttattca 320
           ||||||||||||||||
Sbjct: 220 aaaggaggtttattca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)