BAC Information

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BAC

Clone NameMSMg01-309L07
Chromosome8 (Build37)
Map Location 18,278,726 - 18,278,875
singlet/doubletsinglet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309L07.T7 (MSMg01no309_l07.b1)MSMg01-309L07.TJ (MSMg01no309_l07.g1)
ACCAG433414AG433415
length846946
length of high quality
(start - end)
37 (135 - 171)151 (129 - 279)
definitionCHROMAT_FILE: MSMg01no309_l07.b1 PHD_FILE: MSMg01no309_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:22 2005CHROMAT_FILE: MSMg01no309_l07.g1 PHD_FILE: MSMg01no309_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCTTTTTCTCCGCCTCCTAATACATCCTCCCCATAACGCCTCGTG
NCACCTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGTGAATTCTGTACAAACTGAGACGAATTCCACATCTGGCCTTCTGAT
TGGAAGGAAAAGAAGGATCCATGAGAATCAATCTGAAAGGTATGAAAGGC
CCTAATTGTCCCTGGTTGAAACGTTTAGAGTATATTTAAACTCTAACCAG
CTATTGCTGTTATGTACAGTATATTGTAGGTGTCGATCTTGACTGAGGGC
TTCTTAGTTTTTTGATCCTACACATTCGTTCTACATGGATCGGGATTAGG
TTGCCCCCACAGCCCTGATCACATGTTTTTTTCTTTCCTCATCACGAACA
CCTCCAGAGAAATGTTTTAAATAATTTCCCCCCCCCGCACCCCCTTCTTC
TTTTAATTTGTTTTGAAGTGTTTTGTCCCCCCCCCCATAAAAAAAAAAAA
GTGCGGCGGGGGTCCCTATTTTCTCTCCCCCCTCCCTTTATTCTTCTCCC
CTTTTTTTATCCCCTTCCCCTCCTTCCTTTTTTTTTTGCCACACTCCCCC
TCTTTTTTTTTTTTCCTTTTGCCCCCCATTTCCCTATTATTTTTTACTTT
TTTCTCCTCTCCCCTATTTCATCCATCCCCCTTTTATTCCTTCTTCCGTA
TCCTCCTTATCCCTATTATTTTTCCTATATTTTTATTATACTCATATCTT
ACCTATTTCTTTACATCATACCACACCTTTCCTATTTTGGCCCCTTCTAT
CATAATATCATAATCATTCCTCCCCTCCCATTATTTATTTATTCTT
TCATTTTTTTACCTATACTTCTTTTTTTATTTTTATCCCATCNNNNNNNN
CCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTACTTCTGTGTCTGGATA
GAGATGTTATAAGTATCCTTGCTTTATCTATCTAAGCTTCCAGGGGCTCT
GAGCACAGAGTAGAGGCTTCCTGTTTGTAACTCCTGAGGTAGAGTGAGAG
AGTGAGTGAGTGAGTGTATGTGTGTGTGTGTTTGTATTTATCTTTAACTC
CAATTTTTTTCTCCCTCTCCTTTACCTTTCCCATTATCAACGTCATCCTT
TTCTTTTGCCCTTATTTCTCCTATTTGTTTTTTTTTTTATCACCCCTTTT
TTGTAATACAACACAAGAAGAATTTTAGGTGAGTTTCCCCCCCCCCCCCC
CCCCCTTTTATTTAGTATTTGTTAAATTTGTTTTGATATCCCCCCCCCCC
CCCAACAAAAAAAAAAAATAAAAATATTCCGGCGGGCCGGTGCCACTGAT
CTAAGTTCCTTATTTCTTCCCATTCTCCCTCATTTCTCATATCTTTTTTA
TTTTTTCACTGTTTTTTTTCTTACCGTCTTTTATGCAATGTCATTAATCT
TTTTTCTACATCCACTTTTATTTATTATGCCTACCTTCTTCACTTTATCG
TTTCTTTTCTCATAACTCTTATATGACACTATCCTAAAAAACTCTCCCTC
TTACATATTCTTTTATTATTTTAAGAAATTCATTCATAATATACGATAAA
ATATTTTATGTTTTTATTTTATCTATTTTTCTTATCTCTTCAATAACGTT
CTCCTCTATGATACTCTATCATGATATTCTTATTCACACTTCTATATATC
TATGTTACTTCGCTCACTACACGAGCTTCTGTCCACCTTATTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_l07.g1 MSMg01no309_l07.g1 CHROMAT_FILE:
MSMg01no309_l07.g1 PHD_FILE: MSMg01no309_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:22 2005
         (151 letters)



>mm_chr8_18278563_18279113
          Length = 551

 Score =  267 bits (138), Expect = 2e-76
 Identities = 147/150 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   gtgtacttctgtgtctggatagagatgttataagtatccttgctttatctatctaagctt 61
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 313 gtgtacttctgtgtctggatagagatgttataagtatctttgctttatctatctatgctt 254

                                                                       
Query: 62  ccaggggctctgagcacagagtagaggcttcctgtttgtaactcctgaggtagagtgaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ccaggggctctgagcacagagtagaggcttcctgtttgtaactcctgaggtagagtgaga 194

                                         
Query: 122 gagtgagtgagtgagtgtatgtgtgtgtgt 151
           |||||||||||||||||| |||||||||||
Sbjct: 193 gagtgagtgagtgagtgtctgtgtgtgtgt 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)