Query= MSMg01no309_m07.b1 MSMg01no309_m07.b1 CHROMAT_FILE:
MSMg01no309_m07.b1 PHD_FILE: MSMg01no309_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:26 2005
(178 letters)
>mm_chr8_96080509_96081086
Length = 578
Score = 327 bits (169), Expect = 3e-94
Identities = 172/173 (99%)
Strand = Plus / Minus
Query: 6 aattctcatttaaagtaaatcaacaacttatccccactatgactggaatactgcaatcat 65
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 378 aattctcatttaaagtaaatcaacaacttatccccactatgactggaacactgcaatcat 319
Query: 66 ctccactgaaacaataaggtattaaaaaggtaaaacgatgatctaatccaagatgcacaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctccactgaaacaataaggtattaaaaaggtaaaacgatgatctaatccaagatgcacaa 259
Query: 126 gtcctagtgcaaaataaaagaaacatgaaaaatcaagacagcatggcatttcc 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtcctagtgcaaaataaaagaaacatgaaaaatcaagacagcatggcatttcc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space: 96900
Effective search space used: 96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no309_m07.g1 MSMg01no309_m07.g1 CHROMAT_FILE:
MSMg01no309_m07.g1 PHD_FILE: MSMg01no309_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:26 2005
(542 letters)
>mm_chr8_96023542_96024483
Length = 942
Score = 717 bits (371), Expect = 0.0
Identities = 519/629 (82%), Gaps = 97/629 (15%)
Strand = Plus / Minus
Query: 1 ttccatggggaataaactccatgaggaagggcaaagaaaaggcagtgtacaactgccatt 60
||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 778 ttccatggggaataaactccatgaggaggggcaaagaaaaggcagtgaacaattgccatt 719
Query: 61 tacataataggaagcgtacacaggtagacacatcaggcacttattgtatgccaggtgagg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 718 tacataataggaagtgtacacaggtagacacatcaggcacttattgtatgccaggtgtgg 659
Query: 121 gttccaatccctttacaactaatgccaaaaaaaaaaaaaaaccaaccaaacaaac-aaac 179
||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||| ||||
Sbjct: 658 gttccaatccctttacaactaatgccaaaaacaaacaaa---caaacaaacaaacaaaac 602
Query: 180 aaacaaaaaacctttgctaggtgctcattacctgatgaattatgcttaattaactgatga 239
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aa--aaaaaa-ctttgctaggtgctcattacctgatgaattatgcttaattaactgatga 545
Query: 240 atgagcagggtttgatatcagaccatatggaactcctgaaaatacaaatagctcagcatt 299
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atgagcagggtttgaaagcagaccatatggaactcctgaaaatacaaatagctcagcatt 485
Query: 300 gccagaatagcgtcccacttgaagtctgagtccttctagctctgccttgcactcagcacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gccagaatagcgtcccacttgaagtctgagtccttctagctctgccttgcactcagcacc 425
Query: 360 aggctctcatgatgtcacatgtccagaaagaaga---t---------------------- 394
|||||||||||||||||||||||||||||||||| |
Sbjct: 424 aggctctcatgatgtcacatgtccagaaagaagacactcagcaccaggctctcatgatgt 365
Query: 394 ------------------------------------------------------------ 394
Sbjct: 364 cacatgtccagaaagaagacactcagcaccaggctctcatgatgtcacatgtccagaaag 305
Query: 395 -----actatccagtagaggcgtccgctgtcatggctctgatagatgagccttggactag 449
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 304 aagacactatccagtagaggcgtccgctgtcacggctctgatagatgagccttggactag 245
Query: 450 atcctggaatcagagatgtgtccagaggtgattttcagatgaccttgggcaagtacattt 509
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 244 atcctggagtcagagatgtgtccagaggtgattttcaggtgaccttgggcaagtacattt 185
Query: 510 ccataggagcctcagtttctccctctatg 538
|||||||||||||||||||||||||||||
Sbjct: 184 ccataggagcctcagtttctccctctatg 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
