BAC Information

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BAC

Clone NameMSMg01-312B21
Chromosome8 (Build37)
Map Location 112,323,888 - 112,324,202
singlet/doubletsinglet
Overlap geneAp1g1
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735
Downstream genePhlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312B21.T7 (MSMg01no312_b21.b1)MSMg01-312B21.TJ (MSMg01no312_b21.g1)
ACCAG434424AG434425
length732737
length of high quality
(start - end)
323 (40 - 362)288 (438 - 725)
definitionCHROMAT_FILE: MSMg01no312_b21.b1 PHD_FILE: MSMg01no312_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:07 2005CHROMAT_FILE: MSMg01no312_b21.g1 PHD_FILE: MSMg01no312_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TGTCCTCTGCACTCACGCTAGAGCCCTCATGAAGTTCTGCTGAGTTTGGC
CCTTCACCTTTTCTTTTTGTCTTTTGGGTATTAGCCTGAGCCCAAGTGTG
ACTGACTCTCTGCTTTAGGCCTTGTATTGTTTCTCTGCAGCTCTCCTCCT
GGTCACCATGCTGCTCATCTGTCATGTGACTTATCTCCATGCTGACCTAA
CTCAATCAACATGTTTTTTGTCTCTTTTCTCTCTCCTCCAGGCTGCTGTC
AAGATTTACAGCTTGCCTTCTGGAGTTTTTCTTCAAACTCTATTAATAAA
TTGTCCTGTATTTTATTTACCCCCCCCCGCCGGTGGCATGGACTTTATTT
CTGTGATTTTGCGCCCCCACCACCAAAAATAAAGTCTTGATTTTTTTTTT
TCCAAGTTAGATTATGTACATGCTCTTGGACTAGATTTAAGCTTTTCTAA
CAGTCTTTGTTTGCTTTGTAGAGCTATTGGGTGCTTGTGGGGAAATACTT
TTCTAGCAGAGAGCTTCCCTGCTCTTATAGGTGCTGGGGCTAACCAGGGC
GTTAGTGCATGCTAGGCAAGCTCTCTACCACTCGGCTCTACTCCTGTTCT
TTCCAGTAGCGTTTGTGCTTGACCTTTGAGAGTATCTAGCCTTGAACCTG
TACTGATCCTCAACTTTAGCTTCCCTAGTGCN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGGTATCTTGTCTATCACTATGGCGCGGAGG
AAAGGAAATGGAGAAGGACCTTTACCTTACTTAGACCTGCGCGACATCTA
GTGGTAGAAAAATAGAATTGCAAGTTTTCCCTTTAATGTCCCTAGCCTGT
TTGTTATAAGCAATTGAGCACTTGTTACCCACTAAGCCCTGTGAATGGTG
TAGCTCGCCAAGTATTTGACCCAGGGTCAGGTTGTTCTTCAGCGTTTCAT
ATTGTCGGTTATTCACCCTCTCTGTTCTCAATAGCTCTCAATGCCAGAGT
TTGGGTTATTTGCTTTGTTTGTCCCCCCCCACCCATTCTAGAATTTTCCC
CTGTAACAACTTTAAAGCACCTCCCTCCTTAAAAGAACCCTCTGGAAGGG
GCCTGGCATAGCTCAGCGGCAGAGTGCTTGCATAGCAAACACAATGCCCT
CATTCAATTCCAGTTAAAAAAAAAAAAAGTCCCCTCTGGGGCCAGCGAGA
GGGCTCAGTGTATACATGTACTTGCTGCAAAAACCCGATGACCTGAGTTC
AATCCCCAGGACCCACTGTGAAAGGAGAGAACTGACACGCAAAAGTTGTT
CTCTGACCTATACCTGTGCATAGAGGTTCCACCCACACAACATGCATACT
AATAGTAATAATAATTAACAAATGTTTTAAAAGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_b21.b1 MSMg01no312_b21.b1 CHROMAT_FILE:
MSMg01no312_b21.b1 PHD_FILE: MSMg01no312_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:07 2005
         (323 letters)



>mm_chr8_112323684_112324406
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtcctctgcactcacgctagagccctcatgaagttctgctgagtttggccct 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgccctctgcactcacgctagagccctcatgaagttctgctgagtttggccct 264

                                                                       
Query: 65  tcaccttttctttttgtcttttgggtattagcctgagcccaagtgtgactgactctctgc 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcgccttttctttttgtcttttgggtattagcctgagcccaagtgtgactgactctctgc 324

                                                                       
Query: 125 tttaggccttgtattgtttctctgcagctctcctcctggtcaccatgctgctcatctgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaggccttgtattgtttctctgcagctctcctcctggtcaccatgctgctcatctgtc 384

                                                                       
Query: 185 atgtgacttatctccatgctgacctaactcaatcaacatgttttttgtctcttttctctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtgacttatctccatgctgacctaactcaatcaacatgttttttgtctcttttctctc 444

                                                                       
Query: 245 tcctccaggctgctgtcaagatttacagcttgccttctggagtttttcttcaaactctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctccaggctgctgtcaagatttacagcttgccttctggagtttttcttcaaactctat 504

                          
Query: 305 taataaattgtcctg 319
           |||||||||||||||
Sbjct: 505 taataaattgtcctg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)