BAC Information

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BAC

Clone NameMSMg01-312D05
Chromosome8 (Build37)
Map Location 41,973,634 - 41,973,930
singlet/doubletsinglet
Overlap geneSlc7a2
Upstream geneLOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077
Downstream genePdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D05.T7 (MSMg01no312_d05.b1)MSMg01-312D05.TJ (MSMg01no312_d05.g1)
ACCAG434485AG434486
length725750
length of high quality
(start - end)
297 (51 - 347)239 (72 - 310)
definitionCHROMAT_FILE: MSMg01no312_d05.b1 PHD_FILE: MSMg01no312_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:13 2005CHROMAT_FILE: MSMg01no312_d05.g1 PHD_FILE: MSMg01no312_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCAAGGCAGTCACAGTTATTCTTTATGGTATCTGCCTACCTGTCTTG
TCCCCCCTTAGATTGATGAGTCCTTATTTGACAGGATTCTCATATTTGAT
TTTTTTCTTATTCTCAAACGGCATTGCTATTTATGACTATGAAGCCATAG
CCATATTTTCTCTGAGTACTTAAAAAAAACCCTTTAAAGGGATTTGGGGG
AGCACAAGTATACACTGAGCACATTGGCTAGTCATTACTGAATGTTATCA
GGTACGAGCAAAATATTTCCCTGTCACTAAGAGACATTTTATGAATATTA
TCAAAAAGTATTAATCNGTTTACCCCCCCGCCCCCACTTTTATTGGTTAA
CTCTCTTTCTTATAAGCCCCCCTCAACAAAAAATACAATTTGATTAAGAA
TCTTTTCAAGGAGACTTATTAACAACCAAAGAATCCCATTTCCTTCTTAG
ATTATTTTAATCCAAAAACTAAAAAAATCCTTCTTTTGCCTGCTCACAGG
AATGTTTTTGTTACCAAACTTCAAAATTGATCTTTCCAAATCTGCGGTTC
TAGAATCTCCTATCATTTGCCTTCTTGATCATGTTTGCTCCTTGCATCCC
TATCCCCTGCTATTGAAACCTACCGGGTTCCCGCATTCTTCTCCCGTCAC
TTCTGATTTTTTAATTAATACCTTA
ATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTAATCCACTTAGATTTGACCTTAGTAC
AAGGAGATAGGAATGGATCATTCGCATTCTTCTACGTGATAACCGCCAGT
TGTGCCAGTACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTT
TTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTC
TGGGTCTTCAATTCTGTTCCATTGATCTACTTGTCTGTCGCTATACCAGT
ACCATGCAGTTTTTATCACAATTGCTCTGTAGAAAAGCTTTAGGACAGGA
ATGGTGTTAATTGTTTTACCCCCCCCCCCCCCTGAGAAGAGTTTTTGTTA
TCCTATGTTTGTCGCCCCCCCATATAAAAAAAAACAATCGCCGGTTCGTA
ATTCATTGCATAACTGAGCTGCTATTTTGATGTGGATTGCTTTGAATCTG
TATATTGTTTTTGTCATCATAGCCTTTTTCACTATATAGAATCTTGCCTA
TTCCGTGATAATTGAAATACCCTCCCATCCTTTGTAAACCTTCTTCTATT
TCCTCCCTTATATAGACCTGATAGTTCTTATTTATACCTAATTTTTCATT
TTTCTTTATTTTTCAGTTACTCCTCAATTTCTTTTTATATATTTATTTTT
TACCTCTTTAACATGCGCTCTTTGTTATCCCCTAATTTTCTATATCTCAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d05.b1 MSMg01no312_d05.b1 CHROMAT_FILE:
MSMg01no312_d05.b1 PHD_FILE: MSMg01no312_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:13 2005
         (297 letters)



>mm_chr8_41973434_41974130
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccaaggcagtcacagttattctttatggtatctgcctacctgtcttgtcccccctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttcccaaggcagtcacagttattctttatggtatctgcctacctgtcttgtcccccctta 438

                                                                       
Query: 61  gattgatgagtccttatttgacaggattctcatatttgatttttttcttattctcaaacg 120
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gattgaggagtcattatttgacaggattctcatatttgatttttttcttattctcaaacg 378

                                                                       
Query: 121 gcattgctatttatgactatgaagccatagccatattttctctgagtacttaaaaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcattgctatttatgactatgaagccatagccatattttctctgagtacttaaaaaaaac 318

                                                                       
Query: 181 cctttaaagggatttgggggagcacaagtatacactgagcacattggctagtcattactg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 317 cctttaaagggatttgggggagcacaagtatagactgagcacattggctagtcattactg 258

                                                                    
Query: 241 aatgttatcaggtacgagcaaaatatttccctgtcactaagagacattttatgaata 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatgttatcaggtacgagcaaaatatttccctgtcactaagagacattttatgaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)