BAC Information

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BAC

Clone NameMSMg01-312J01
Chromosome8 (Build37)
Map Location 86,983,218 - 87,143,393
singlet/doubletdoublet
Overlap geneCacna1a
Upstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312J01.T7 (MSMg01no312_j01.b1)MSMg01-312J01.TJ (MSMg01no312_j01.g1)
ACCAG434747AG434748
length732782
length of high quality
(start - end)		320 (41 - 360)210 (71 - 280)
definitionCHROMAT_FILE: MSMg01no312_j01.b1 PHD_FILE: MSMg01no312_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:40 2005CHROMAT_FILE: MSMg01no312_j01.g1 PHD_FILE: MSMg01no312_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,983,218 - 86,983,533)(87,143,184 - 87,143,393)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGGGTTCTGAAGCCTAGGCAATAGGAACCTTGCTGACACAGCAGTACCTA
AACGTGGTGCCAGCTGCTGCTAAGGCACTTCCATGGCAGCCATCTGGGGA
CAGGAAGCCAAGGAATGCCAGCAGGAGATGGTGGCTCTGAGAAGAAGCAG
CCACTCAGGCTGGGCGGGCTGGCTGTGTGAGGATGTGAGTCTCATTCAAA
TCGCCAGCAAGGGCTTGGCCTCCCTTTCTCTGTGTGCAAATATCAGCTCT
TGTTTTCCAAGCTGCAGGGTGAGACAGAGGGGAGTCTGCAGCGCTTTGTT
CTGGGGCTATTCTTTTTTACTGACACCGCCCAAGCCAGTCACTGATGGGC
TCTGAGAAGGTTTTGCCACCTTCCTAAAATGCTGTTTGCAGCTGTGCAGT
GAAGCTGAAGCAAAACACAGGAAGGGCCTGGCTTTCCCAAGTCACTTCCT
CCTACGTTCACTCTCTCTGCCTTCCCACCTGGAAAATGGGTCCAGGCTTA
GCTCCTTCCAACCCTCTAAGGGGTAGACTGATAGCACTTCCAGAATACAG
TGGCCTGTGATCCCATCATTTGGGAGGCTGAGGCAGGAGGCTCCTGAGTT
TGAGGCTACATGTTAAGCCCCCGCCTCAAACAAAACAAAACAAAACAAAA
AATCAAGACCAAACAACAACAAAAGTACGATC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGTCTGGAAAACAAACAAACAAATGATAC
TAAGAAGACACAAAACAAAAAGATGCTAAAAGATACTAAAACACAAATTC
AAATGAGAAGAAACTGGTTGGAAACAAATGGTCACTTGGTATCTTTGCTG
GTTTTGTTTAGTATTTGCTAATTCAAAGGGCATTTTTTTAAGGGTTTCTC
TATTTCTCTGTGTAGCCCTGGCTGTCTTGGAATTCACTCTGTAGACCAGC
TGGTCTTAAAGTCACAGAGATTTTTTTGCCTCTGCTTCCCAAGAGCCGGA
AGAAAAGGAGTTTTTTATTTTCCCAGAGCAGGAGCCCCATAAAATAGTTT
TGAGAGATCTGNTTTCCCCCCCGCAAAAAAAAAAAAAAAAAGCTGGGGGG
GGGGGGGTGTTTAGATAGGCTTACCCAGTTAGCCATTTGTCGCAGAAATC
TCCTTTATCAAATCGTAGCCATATGATTAGTTTAGATACTTCCTTATCTT
AGATACACACGTTTACTTCCCTTGATTCCCCGTGCCCCCCATTGTCCACA
GTTTATGCTTCTATCTTTTACGATTCTCGATATAATCCTTCCTACAGAAA
GCCCATTTACGCTTATACCTTCCTTTTATCTCCAGTTTTCGGTTTTTATA
ATTCCTTTCCATATTTCCTACCTTTTACATTCCCTCATTCATCTAAAACT
AATGTTTATTCCACATTCCCTCCATAATCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_j01.b1 MSMg01no312_j01.b1 CHROMAT_FILE:
MSMg01no312_j01.b1 PHD_FILE: MSMg01no312_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:40 2005
         (320 letters)



>mm_chr8_86983015_86983734
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgggttctgaagcctaggcaataggaaccttgctgacacagcagtacctaaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgggttctgaagcctaggcaataggaaccttgctgacacagcagtacctaaac 263

                                                                       
Query: 64  gtggtgccagctgctgctaaggcacttccatggcagccatctggggacaggaagccaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtggtgccagctgctgctaaggcacttccatggcagccatctggggacaggaagccaagg 323

                                                                       
Query: 124 aatgccagcaggagatggtggctctgagaagaagcagccactcaggctgggcgggctggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgccagcaggagatggtggctctgagaagaagcagccactcaggctgggcgggctggc 383

                                                                       
Query: 184 tgtgtgaggatgtgagtctcattcaaatcgccagcaagggcttggcctccctttctctgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtgtgaggatgtgagtctcattcaaatcgccagcaagggcttggcctccctttctctgt 443

                                                                       
Query: 244 gtgcaaatatcagctcttgttttccaagctgcagggtgagacagaggggagtctgcagcg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgcaaatatcagctcttgttttccaagctgcagggtgagacagaggggagtctgcagcg 503

                           
Query: 304 ctttgttctggggcta 319
           ||||||||||||||||
Sbjct: 504 ctttgttctggggcta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no312_j01.g1 MSMg01no312_j01.g1 CHROMAT_FILE:
MSMg01no312_j01.g1 PHD_FILE: MSMg01no312_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:40 2005
         (210 letters)



>mm_chr8_87142984_87143593
          Length = 610

 Score =  406 bits (210), Expect = e-118
 Identities = 210/210 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtctggaaaacaaacaaacaaatgatactaagaagacacaaaacaaaaagatgctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctgtctggaaaacaaacaaacaaatgatactaagaagacacaaaacaaaaagatgctaaa 351

                                                                       
Query: 61  agatactaaaacacaaattcaaatgagaagaaactggttggaaacaaatggtcacttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agatactaaaacacaaattcaaatgagaagaaactggttggaaacaaatggtcacttggt 291

                                                                       
Query: 121 atctttgctggttttgtttagtatttgctaattcaaagggcatttttttaagggtttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atctttgctggttttgtttagtatttgctaattcaaagggcatttttttaagggtttctc 231

                                         
Query: 181 tatttctctgtgtagccctggctgtcttgg 210
           ||||||||||||||||||||||||||||||
Sbjct: 230 tatttctctgtgtagccctggctgtcttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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