BAC Information

Click to search

BAC

Clone NameMSMg01-316H20
Chromosome8 (Build37)
Map Location 80,680,852 - 80,681,136
singlet/doubletsinglet
Overlap genenone
Upstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra, EG622803
Downstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316H20.T7 (MSMg01no316_h20.b1)MSMg01-316H20.TJ (MSMg01no316_h20.g1)
ACCAG436820AG436821
length732732
length of high quality
(start - end)
684 (49 - 732)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no316_h20.b1 PHD_FILE: MSMg01no316_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:15 2005CHROMAT_FILE: MSMg01no316_h20.g1 PHD_FILE: MSMg01no316_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGACTTGTAAAGCCTCGAGGATGGTCGGTGTGAGTGTGAATT
GGCACCACTGCTTTAGAAAACAAACCGACAGTTCCTCAAAAGTTATAACA
CAGATGGTTATATGCATGGTTTAGAAATTTGACTGCAAGGTATGCAACTA
AGAGAAACAGTGATATGTCCACACAAAAAATCTACACGTTGATGTCAGAG
CAGCATTTGGAATAATAATCAGTGAGTGAACACTACTGAAAAGTTCATCA
GTTAGTTGATGACTTAGAATGTGGTGTGTCCCTACAGTGGAATATTACTT
TGTCATGAAAATGAAGTGCTGATACATGATAAACCAACTAAAATTTGGAA
ATACTAGGTGAAAAGAGTCACAAACCAAAGATTCTATATTGTGTATTCGT
TTTATACAGTGTGAAGAATGGACAAATCAACCAAGACAGAGGCAGTAGGC
TAGTGGCAGCCAGAGTATGCAGGAGGGAGATGAAGGGTAACTAATGACCC
ATACAGGATTTCCTTAAAACGTAACAGAGTTCCTGAAACAGAAGGGAGTC
CTGACTACCCAATTCTGTGCATGCAATACAATCTCCGAGTTGTGGGATTT
AGAAGGAGAATTAGTATAGTTTTATGAATTGTCTCAATAAATCTCTTTTA
AAAACTTCTAAAAAGTGTATAAAAAGTGAAAA
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGGAAGGCAGATAACAAGTGTTT
CATGATGAAACATCTTGAAAGAACACAAAAGGGAAGGAAGGCACCACCGA
GTTCACTGCCCATCTAACATAGTACCAATCAGAACTGACTGACTCAATTG
TCTGTATTTGATCTGGTACTAGTGGTACTAATGTCCTTCTTTAGAGAGGA
AGTTTAATCATAGGACACAGGTTCTGAGCAGGTGAGGTGGGGCACCTCTA
AGGTCTGTGTTACTGTCCTTGTTTGATGACGAGCAGGGAGAAAAGCCAGC
TTTGATTGGATTTTTGGGCATGCCTACGCCTTCTCTTTAGTCTGTGAGTG
TGACTTTCATCTCTACCCACCCTGGCCTCCATTCCACAGTGTGCATGCCA
CAGAAGACATAGGCAACATGCCTAACACAGTAACCTATCCAGCTAGTACT
ATGGCTTGAACATTTGTCCCCCAAAGGCTCCTGTGTGGGAAGCCGCAAAC
GCCATTACAAGATGGTGCTGGCTACCACTGGCCACCACCCATGATTATGG
GTAAACAACCAATGTGTGCATGTGCATAAGAGGTTTTTTTGCCGAGTCAC
TGCCTGGTCCGACGCATATTATTGAGGTACTGGTAGCATAACCAATCAGG
TATGGATCCGTCTCTACTAGGCCTATTTAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_h20.g1 MSMg01no316_h20.g1 CHROMAT_FILE:
MSMg01no316_h20.g1 PHD_FILE: MSMg01no316_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:15 2005
         (288 letters)



>mm_chr8_80680652_80681339
          Length = 688

 Score =  482 bits (249), Expect = e-140
 Identities = 276/285 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggaaggcagataacaagtgtttcatgatgaaacatcttgaaagaacacaaaagggaa 60
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 201 cttggaaggcagataacaagtgtttcatgatgaaacatctcgaaagaatacaaaagggaa 260

                                                                       
Query: 61  ggaaggcaccaccgagttcactgcccatctaacatagtaccaatcagaactgactgactc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ggaaggcaccaccgagttcactgcccatcgaacatagtaccaatcagaactgactgactc 320

                                                                       
Query: 121 aattgtctgtatttgatctggtactagtggtactaatgtccttctttagagaggaagttt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgtctgtatttgatgtggtactagtggtactaatgtccttctttagagaggaagttt 380

                                                                       
Query: 181 aatcataggacacaggttctgagcaggtgaggtggggcacctctaaggtctgtgttactg 240
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aatcataggacacaggttctgaacaggtgaggtggggcacctctaaggtctgtgctactg 440

                                                        
Query: 241 tccttgtttgatgacgagcagggagaaaagccagctttgattgga 285
           ||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttgaaggatgacgagcagggagaaaagccagctttgattgga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)