Query= MSMg01no316_j02.b1 MSMg01no316_j02.b1 CHROMAT_FILE:
MSMg01no316_j02.b1 PHD_FILE: MSMg01no316_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:21 2005
(616 letters)
>mm_chr8_59173592_59174608
Length = 1017
Score = 1077 bits (557), Expect = 0.0
Identities = 602/617 (97%), Gaps = 1/617 (0%)
Strand = Plus / Minus
Query: 1 ggacttgaagtcatttgtgcttgggttttagccaatactttctacaagtttctgccttgt 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 817 ggacttgtagtcatttgtgcttgggttttagccaatactttctacaagtttctggcttgt 758
Query: 61 gaatggaaagattttctccattccactgtagcatctgggcaagtagtagtctactgacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaatggaaagattttctccattccactgtagcatctgggcaagtagtagtctactgacag 698
Query: 121 acagaaggcaggtgtagaacagtataagggtaagtccagcccatgacaagtatctatgca 180
|||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct: 697 acagaaggcaggtgtagaacagtataagggtaagtctagcccatgacaagcaactatgca 638
Query: 181 tggttcgggataaatattctacaaggactagttccttcccttccatc-tttttttttctc 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 637 tggttcgggataaatattctacaaggactagttccttcccttccatcttttttttttctc 578
Query: 240 catcataacagattgtatttatctaaaccatggcattggtgattggatgtgaggattagt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catcataacagattgtatttatctaaaccatggcattggtgattggatgtgaggattagt 518
Query: 300 tcctacttttgaacacatccctgtcccctttacactcatagccttcaattacccaagata 359
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 517 tcctacttttgaacacatccctgtcccctttacactcatagccttcaactagccaagata 458
Query: 360 aacaacaaacagatggaatggactgtgatctaaaactcaagccaagaattgatcagccct 419
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 457 tacaacaaacagatggaatggactgtgatccaaaactcaagccaagaactgatcagccct 398
Query: 420 tcagatcctttggagttggtactgtgatagtggcaaggatggggtgtctttgtgccagtg 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcagatcctttggagttggtaccgtgatagtggcaaggatggggtgtctttgtgccagtg 338
Query: 480 gtttgaaaccccagactccatgtacttcctgattgcaaggagtgatcaaccatctcccca 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 337 gtttgaaagcccagactccatgtacttcctgattgcaaggagtgatcaaccatttcccca 278
Query: 540 aagcttatggaatcaaaatttcacagagagagaactacttcttcaaaatattattacctc 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 277 aagcttatggaatcaaaatttcacagagagagaactacttcttcaaaatattattatctc 218
Query: 600 cttctgtttgacaaaca 616
|||||||||||||||||
Sbjct: 217 cttctgtttgacaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_j02.g1 MSMg01no316_j02.g1 CHROMAT_FILE:
MSMg01no316_j02.g1 PHD_FILE: MSMg01no316_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:21 2005
(421 letters)
>mm_chr8_59030808_59031628
Length = 821
Score = 735 bits (380), Expect = 0.0
Identities = 412/424 (97%), Gaps = 3/424 (0%)
Strand = Plus / Plus
Query: 1 actgtgtagtcccgactgtccctagctagcaatcctttttcttggccttccacaggcttg 60
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 actgtgtagccccgactgtccctagctagcaatcctttttcttggccttccaaaggcttg 260
Query: 61 gaagtatggttttgcaacaggtcactaagtactcttctctttgctttggttctttggact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtatggttttgcaacaggtcactaagtactcttctctttgctttggttctttggact 320
Query: 121 ttggcactttcactccgacgagaagagcttccggctacctttgtgaaaggtttttgttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggcactttcactccgacgagaagagcttccggctacctttgtgaaaggtttttgttgt 380
Query: 181 tgttgttgttgttgttgtt---gttttgtttttacaatgtagagcaggtctcagaatgaa 237
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgttgttgtttttgtttttgttttgtttttacaatgtagagcaggtctcagaatgaa 440
Query: 238 caataaataaatttattattttcaggttaattcagaaacttcttgcttatacagtttttc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caataaataaatttattattttcaggttaattcagaaacttcttgcttatacagtttttc 500
Query: 298 taaattaacaattacctaagtatcgtcattagtttcatattgctggcccacgattatccc 357
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 501 taaattaacaattacctaagtatcgtcattagtttcatattgctggtttatgattatccc 560
Query: 358 caaatttaatgcagcttaaaacaacaaacatgtactatcttggttgctttgaggcaagta 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 561 caaatttaatgcagcttaaaacaacaaacatgtactatcttggtttctttgagtcaagta 620
Query: 418 tcag 421
||||
Sbjct: 621 tcag 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
