BAC Information

Click to search

BAC

Clone NameMSMg01-317I24
Chromosome8 (Build37)
Map Location 87,210,467 - 87,368,676
singlet/doubletdoublet
Overlap geneBtbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr
Upstream genePkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975
Downstream geneLOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317I24.T7 (MSMg01no317_i24.b1)MSMg01-317I24.TJ (MSMg01no317_i24.g1)
ACCAG437593AG437594
length729730
length of high quality
(start - end)		683 (47 - 729)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no317_i24.b1 PHD_FILE: MSMg01no317_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:35 2005CHROMAT_FILE: MSMg01no317_i24.g1 PHD_FILE: MSMg01no317_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:35 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(87,367,996 - 87,368,676)(87,210,467 - 87,210,757)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGA
ATTCACACACCTTTCCACACTGATTGTGCGGCCAGACAACACCTATGAGG
TGAAAATTGACAACAGCCAGGTGGAGTCAGGCTCCTTGGAGGATGATTGG
GACTTTCTGCCACCCAAGAAGATAAAGGACCCTGATGCTGCCAAGCCGGA
AGACTGGGATGAACGAGCCAAGATCGATGACCCCACAGATTCCAAGCCTG
AGGTTAGTGTTGGGAGGGTAGCTCCACCTCTGTCATAGAATGGAGGACAT
CTGGGTCCACTTTGACCTCCACGTGTACTCCTAGGACTGGGACAAGCCAG
AGCACATCCCTGACCCTGATGCTAAGAAGCCTGAGGACTGGGATGAAGAG
ATGGATGGAGAGTGGCAACCACCAGTGATTCAAAATCCTGAATACAAGGT
AGGCTTGGGTGTTTGGGTGTGGCTCCCTGGTGGGATGTTTCCTTGGGTGC
TATGATTAATGTTGCACTGCAGAAACAAACCAAGATAGGCCTTGGGGTCC
TAGTCGGGGTTGTTGGCTGTACTGTGGGATGTGTCTGCCTCTCTATTCAT
CTGGTTTTCTTCTACAGGGCGAGTGGAAACCACGTCAAATTGACAACCCA
GATTACAAGGGTACCTGGATACACCCAGAAATTGACAACCCTGAATACTC
CCCCGATGCAAATATCTATGCCTATGATA

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGGCCCAGGCAGCAGGTTGGGCCTGGA
AAGCTAGGGCGTATTGCAACGCCGTGAGGGCTCATCTTCTAGACTGGAGC
CCCCAGGTTCCGGCGCCAGAAGGCTGAGAACGATTTCAGGACTCTAGAAT
AATCAGGTAATGTCTGCTGGGCTGCCTCCATAGTGGGTGGGGTAGGGCGG
TGGGTTGAGTAGGGGCCATACACACCGAAAACAAGATGTTTGAACTAGGT
ATCCGGTGCAGCCCACGCTATTTTCCATCCAGCCGCTGGCCTGTCCTTGT
TAGCAGTTGGCCAAGGTGCCCGAGAAGAGGCGTGGGAAAGAGGAACCCCC
CCCCCCCCGGTTCCGCCCCCAACCAAACATACGGAGATGTGTGTGTGTGG
GGGGGGCAGATCCCTTAGCTCACACCAGGTTTTCCTAACCTGCTCCCCAC
ATCCTAAACCATAGGCCCTGGGCCGCCTGCTAACTCCCAACACGCCCAGC
CTTACCTGATGCCCTCCCGTCGGAGTTTACCCGCACATCTCTAGTCTCTG
ACCTCGTGCGACCCCCTGTCAATATCTTATGGCTCTCTCCAATCCGCCCC
CATTCGAGTAATCTTCCGCCCACCCCTCCCCATGGCTAATTTCTCGGGCT
TTTCCTTTCCCTCCCCCTCCGGTCTGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_i24.b1 MSMg01no317_i24.b1 CHROMAT_FILE:
MSMg01no317_i24.b1 PHD_FILE: MSMg01no317_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:35 2005
         (683 letters)



>mm_chr8_87367794_87368876
          Length = 1083

 Score = 1294 bits (669), Expect = 0.0
 Identities = 678/681 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcacacacctttccacactgattgtgcggccagacaacacctatgaggtgaaaatt 62
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gaattcacacacctatacacactgattgtgcggccagacaacacctatgaggtgaaaatt 824

                                                                       
Query: 63  gacaacagccaggtggagtcaggctccttggaggatgattgggactttctgccacccaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gacaacagccaggtggagtcaggctccttggaggatgattgggactttctgccacccaag 764

                                                                       
Query: 123 aagataaaggaccctgatgctgccaagccggaagactgggatgaacgagccaagatcgat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aagataaaggaccctgatgctgccaagccggaagactgggatgaacgagccaagatcgat 704

                                                                       
Query: 183 gaccccacagattccaagcctgaggttagtgttgggagggtagctccacctctgtcatag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaccccacagattccaagcctgaggttagtgttgggagggtagctccacctctgtcatag 644

                                                                       
Query: 243 aatggaggacatctgggtccactttgacctccacgtgtactcctaggactgggacaagcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aatggaggacatctgggtccactttgacctccacgtgtactcctaggactgggacaagcc 584

                                                                       
Query: 303 agagcacatccctgaccctgatgctaagaagcctgaggactgggatgaagagatggatgg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agagcacatccctgaccctgatgctaagaagcctgaggactgggatgaagagatggatgg 524

                                                                       
Query: 363 agagtggcaaccaccagtgattcaaaatcctgaatacaaggtaggcttgggtgtttgggt 422
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agagtgggaaccaccagtgattcaaaatcctgaatacaaggtaggcttgggtgtttgggt 464

                                                                       
Query: 423 gtggctccctggtgggatgtttccttgggtgctatgattaatgttgcactgcagaaacaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gtggctccctggtgggatgtttccttgggtgctatgattaatgttgcactgcagaaacaa 404

                                                                       
Query: 483 accaagataggccttggggtcctagtcggggttgttggctgtactgtgggatgtgtctgc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 accaagataggccttggggtcctagtcggggttgttggctgtactgtgggatgtgtctgc 344

                                                                       
Query: 543 ctctctattcatctggttttcttctacagggcgagtggaaaccacgtcaaattgacaacc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctctctattcatctggttttcttctacagggcgagtggaaaccacgtcaaattgacaacc 284

                                                                       
Query: 603 cagattacaagggtacctggatacacccagaaattgacaaccctgaatactcccccgatg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cagattacaagggtacctggatacacccagaaattgacaaccctgaatactcccccgatg 224

                                
Query: 663 caaatatctatgcctatgata 683
           |||||||||||||||||||||
Sbjct: 223 caaatatctatgcctatgata 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no317_i24.g1 MSMg01no317_i24.g1 CHROMAT_FILE:
MSMg01no317_i24.g1 PHD_FILE: MSMg01no317_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:35 2005
         (291 letters)



>mm_chr8_87210267_87210957
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcccaggcagcaggttgggcctggaaagctagggcgtattgcaacgccgtgagggctca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ggcccaggcagcaggttgggcctggaaagctagggcgtattgcaacgctgtgagggctca 260

                                                                       
Query: 61  tcttctagactggagcccccaggttccggcgccagaaggctgagaacgatttcaggactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctagactggagcccccaggttccggcgccagaaggctgagaacgatttcaggactc 320

                                                                       
Query: 121 tagaataatcaggtaatgtctgctgggctgcctccatagtgggtggggtagggcggtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaataatcaggtaatgtctgctgggctgcctccatagtgggtggggtagggcggtggg 380

                                                                       
Query: 181 ttgagtaggggccatacacaccgaaaacaagatgtttgaactaggtatccggtgcagccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagtaggggccatacacaccgaaaacaagatgtttgaactaggtatccggtgcagccc 440

                                                              
Query: 241 acgctattttccatccagccgctggcctgtccttgttagcagttggccaag 291
           ||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgctaactcccatccagccgctggcctgtccttgttagcagttggccaag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |