BAC Information

Click to search

BAC

Clone NameMSMg01-317M07
Chromosome8 (Build37)
Map Location 54,873,432 - 54,873,725
singlet/doubletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317M07.T7 (MSMg01no317_m07.b1)MSMg01-317M07.TJ (MSMg01no317_m07.g1)
ACCAG437746AG437747
length775804
length of high quality
(start - end)
294 (73 - 366)82 (79 - 160)
definitionCHROMAT_FILE: MSMg01no317_m07.b1 PHD_FILE: MSMg01no317_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:49 2005CHROMAT_FILE: MSMg01no317_m07.g1 PHD_FILE: MSMg01no317_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGG
AATTCTTAGGTCATTTTCCCCACTCTTGATCATGATTTTAATGGCCTTAA
AATCTTGCATATGTATCTGAGTGGTCCTTTCCTGGCTTTCATTCTCTTCA
TTGCTCATCTTCTAGTATTTGGTGATGTTATACCTAAATGGTGTGGTTTA
ATTAGGAAAGATTGACCATTGTTGCTCGGTCAAAAGTACAGTCTTGGGAG
TCTATGGTGCTTTTGGAACTGAGTCCTGGCTTGTACAAGCAAGCTACTAG
AATAGGGCTTGATGGGCATATCTGTTTCTGTTTCCTGCTTCAGTTTCCTG
CTTCCTGGTTTGCCAATATTATTACATCACCCTTCTTAGCAGCCAACATT
GCTGAAGTGAGTCACACAATCAAAACATTCATTCAGTCAATGTGTAGAGT
GTTTGCATGCAATTGTCTCCATGCTGTAAGTTGTTATTGTTATAAAATAA
ACCATTATATTTTGATTAAGCCTCATGTTTGAGCCAAAGCTTAATAGATT
CATAAAACATGATTAGAAAGGAATGACAATCACTGTAGAAAATTGTTAAA
CAGAAAAGAATATTGAAAAGAAAGAAAATGAGTTACCAAATAGATAAGAA
TCAATGAAAATGAAAACAAGAACTACTTTACAAATATTGTTAATAATTAC
CTTAAGTATTAATTAGATAAATAGATACTAAGACTTTAAGTGGAGGGGAA
GGGGTTATAGTACAAGACCAATTTT
ATACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTACTGGCTTCANGACCTC
ACACTGTGCACAGCCTCTGCATCTTGAACACGCAATTTANTTAGTATTAA
ATATTCTTGANGAATANCANTTGNAANCGNTACCATCATATCAGGACCAC
ATGCATGTAANGAGACCATAAATCGCTCTGCTTATAATTATTTCTCCATT
TGTTCTCACTAATGGAACCTATATAGTTCTTGGAAGACACNTCCATATAT
TCCNTAAATACACTTCATCTTATTTTNCCAACCCCCCAAACAAATAATTT
TATAGATAATGGTTAATTACACATTCTAATTTTTTTTNNNCTTTTTTATG
GGAAGAAATTGTTCCCCCCCCTTTTTGTGGGGGGGGGGGAGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTATCCCC
AAAAATTTCCCATTTCCCCTTTAAAAATTTTCGGGAGGTAGGGGGAGCCG
CGGAGGGNNNTTTNNNAAAAAAAATTCCAATATNCTTCCCATAATTCCCC
AAAATTTATTTCTTCCTCTNNNNNTTAACCTTCTAAACCTTAAAAATTCC
CCCCACAACCCTCTACACTAAAAAAAAAAAAAATTTTTCCTTTTTTGCGC
AAAAAAATAAATNTTTNNTTTAAAAAAAANNCAAAAATTTTTTTTTCCCC
CTTTTTTTCTCCCCTTATAAAACACTCCCCCCTCCCCCTTTCTGTTTGTG
GTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_m07.b1 MSMg01no317_m07.b1 CHROMAT_FILE:
MSMg01no317_m07.b1 PHD_FILE: MSMg01no317_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:49 2005
         (294 letters)



>mm_chr8_54873232_54873925
          Length = 694

 Score =  530 bits (274), Expect = e-155
 Identities = 289/294 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttgatcatgattttaatggccttaaaatcttgcatatgtatctgagtggtcctttcc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 201 ctcttgatcatgattttaatggccttaaaaccttgcatatgtatctgagtggttctttcc 260

                                                                       
Query: 61  tggctttcattctcttcattgctcatcttctagtatttggtgatgttatacctaaatggt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tggctttcattctcttcattgctcatcttctagtatttgatgatgttatacctaaatggt 320

                                                                       
Query: 121 gtggtttaattaggaaagattgaccattgttgctcggtcaaaagtacagtcttgggagtc 180
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 321 gtggtttaattaggaaagattgaccatagttgctccgtcaaaagtacagtcttgggagtc 380

                                                                       
Query: 181 tatggtgcttttggaactgagtcctggcttgtacaagcaagctactagaatagggcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatggtgcttttggaactgagtcctggcttgtacaagcaagctactagaatagggcttga 440

                                                                 
Query: 241 tgggcatatctgtttctgtttcctgcttcagtttcctgcttcctggtttgccaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggcatatctgtttctgtttcctgcttcagtttcctgcttcctggtttgccaa 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)