BAC Information

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BAC

Clone NameMSMg01-318E04
Chromosome8 (Build37)
Map Location 100,092,578 - 100,092,868
singlet/doubletsinglet
Overlap geneLOC636859
Upstream geneLOC333331, LOC546090
Downstream geneEG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318E04.T7 (MSMg01no318_e04.b1)MSMg01-318E04.TJ (MSMg01no318_e04.g1)
ACCAG438109AG438110
length718721
length of high quality
(start - end)
294 (68 - 361)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no318_e04.b1 PHD_FILE: MSMg01no318_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005CHROMAT_FILE: MSMg01no318_e04.g1 PHD_FILE: MSMg01no318_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTTTCCATGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAATTTTCAGCGTCTCCGCCCCCATGTGAAGTTCCTTGATCC
ACTTAGAGTTGACCCCCCCCCCCCCANATAAATATGGATCGATTCGTATT
CTTCTACTCAATTACTACCAGCTGTGCCAGCCGCAATTGTTGAAAATGTT
GTTTTTCTTCCACTGGTACGGTTTTAGCTCCCTTGTCGAATATCAGGTGT
TTATATTTTTGCGGGTTCATTTCTGCCTTTTTCCATTCTATTTCCTTGTT
TTACTTGACCGGCTCTATTTTATTTACTTGCTTCCTATTATTTTTATTGC
CTCTGTTCTTTACCTTTCTTTTCTTTATTGTTGATTTCTCTCAAACTTTT
TTCTATCCTTGCGTCCTG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGACAAAGGCATAGAACACAAATTA
AATGCAATGATAGGAAAAAAAATCCTAAAACAATGGAGATAGAATTTGTA
TATGTGCAAGATCACCAACTACATGGGAGCAAAAGATAAGCTTTTCAGGA
CATTTTATGGTGAAAAGAATAAACATGAAGGATGAAAAAAAAATTCAGAA
TCACAAGAAAGAAGTCAGGGATCAGTCAAATAGAATACTTCCAACAACAC
AAATATGATGAAAAGAAAATCATAGAATCAGTAGCATCCCAAAGTAAATA
CAACACAATAGAAAATATAACAGAACACACTCCCTTGGATTAAACCTGAC
TAAGGAGGTGAAAGAACTCTCCCCCCACAACATATGTTGAAAGTTAAAAA
AATAATCTAGGCACACTCTATGACATGAAAAGTTCTTCCGTGCTCATGGC
TTGCTGCTATTTATGTTGTCAAAATTATTATTCTGCTAAAAGCAGCTCAC
AGATGCAATGCAACATCATCAGACCCTTGAAATACACATTATTTCAGATA
GGCTAAACAATCCTGAGGAATAAAGAAAGTAATGCTGAAGAAATTCCTAT
ATCCAATTGCCAATTATGAGCCAAAGCTAGTATCTATATGGCCCATCCAT
TCTGTCTCAGCTCCTAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_e04.g1 MSMg01no318_e04.g1 CHROMAT_FILE:
MSMg01no318_e04.g1 PHD_FILE: MSMg01no318_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:25 2005
         (292 letters)



>mm_chr8_100092378_100093069
          Length = 692

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagacaaaggcatagaacacaaattaaatgcaatgataggaaaaaaaatcctaaaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagacaaaggcatagaacacaaattaaatgcaatgataggaaaaaaaatcctaaaacaat 260

                                                                       
Query: 61  ggagatagaatttgtatatgtgcaagatcaccaactacatgggagcaaaagataagcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagatagaatttgtatatgtgcaagatcaccaactacatgggagcaaaagataagcttt 320

                                                                       
Query: 121 tcaggacattttatggtgaaaagaataaacatgaaggatgaaaaaaaaattcagaatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggacattttatggtgaaaagaataaacatgaaggatgaaaaaaaaattcagaatcac 380

                                                                       
Query: 181 aagaaagaagtcagggatcagtcaaatagaatacttccaacaacacaaatatgatgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaagaagtcagggatcagtcaaatagaatacttccaacaacacaaatatgatgaaaa 440

                                                              
Query: 241 gaaaatcatagaatcagtagcatcccaaagtaaatacaacacaatagaaaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaatcatagaatcagtagcatcccaaagtaaatacaacacaatagaaaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)