BAC Information

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BAC

Clone NameMSMg01-318J13
Chromosome8 (Build37)
Map Location 9,271,225 - 9,271,514
singlet/doubletsinglet
Overlap geneTmem28
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318J13.T7 (MSMg01no318_j13.b1)MSMg01-318J13.TJ (MSMg01no318_j13.g1)
ACCAG438353AG438354
length773787
length of high quality
(start - end)
290 (77 - 366)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no318_j13.b1 PHD_FILE: MSMg01no318_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:48 2005CHROMAT_FILE: MSMg01no318_j13.g1 PHD_FILE: MSMg01no318_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGATTCGCGGA
ATTCAAGGAAAGATAGCTTGAAGGATGTAGAAGAATACACAGGAGTCCAA
ACTAGAGGAGGTTTCCCACATAATCCCCTCCTATTTAGCTCTTCTAAACT
TTGTCAGTCTTCTGATACCTTTGAGTGACTCATAAAATACAAGTCAATTG
TGTTCCTATGAAGTTTTCCCACAGCAGTAAGGTAAGGCTCACTTTGTCTT
CATAGAGCTTGTGACTGGGGGGTGGTGGTCATTGTTTAGAACATATTATC
TTATATGCCATTCACATTCCAAATATTTTGTAGGCAGGGGGTGTTGATAA
CCTCTGTGGTTCAGTATTTCTTTTCTGCCACACCCCCCCCTGTGTGCTTA
GTTTTAATGGTTAGTGTTCCCCCCCCCCCCACAAACAAAAATGTATAGAG
TCCCAGTGAAAGGCTGCCAGAATCAGATGGCTGATTTGTGGGAATGCCTG
TGGGCAATTATTTTAATAACATTGAAGTTAGAAGGTCTGCCCACTATGGC
CAGCACGATTCCCTATACTTTGGATCCTGAAGTGAATAAAACAGAGAAAT
CTCGTTGTTGCCTATGTATGAATGCATCCGTTTCTCTCTGCTGCTGTGTG
AGGGAGAACGTGATGAAGCATACGTTCTACTTTCTTTGAAACCACTTTCC
TGATGGACTGTAACCCGTAAACGTGAGTTCTAACAACTCTTCCTTGAATT
GATTTGCTTTTTCTGGTACGTTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGAAGCTGGAACTGCATGCACAAGAC
TTAGATAATATCAAGCCAGGCACCACTAGCATGGATGAGCTATTGGCATT
TCACAATTGATAGCTTCTAGAGGTGATTGAGTCACTTATTTTTAGGGATT
TGGGTCTTGAGGTATTACCCAGGAGATATTCATGCACATACATGCAATAA
ATGTACTATATATACATATACATATATATATATACATATATATATATATA
TGACATAAACAGTGGGAGGAGAGAGTTTTAGAAAGAGAGAGAGAAAGAGA
GAGAGAGAGAAAGATTTTTTTTTTCCCCTCCCCCCCTGGTGAAATGAAGT
TGGGAGGAGAAAGGNCCCCCCCCCTCCCCAAAAAAAAAAATAATTTTGGG
GGGGGTGGTTTTATCCTTCCCTATTCCTCTCTTTTAATCTTTTTTCCCTT
TAACTTCTTTTCATTTTCTTATTCTTCTAATTACACTTCTCCTATTTTAT
ATTTTATCTTATCTTTTACCTTTATCTATTTATTTCCTCATCACTTTTCT
ATTTTCCAATTTTCACCACATCCTCTATTCCTTTCTTATTCCCTTCTCCA
TTCTATTTGCTCCCCCTTTTTACTCTTCTCCCTCTTTTTTTTTTCCTTTT
CTTTCTCTTTTCTTTTTCCGCTTTTTTCTCTTTCACATTTATATATCTCT
ATTTCTTTCCCCCCTTTTGCCAGTTTTATTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_j13.b1 MSMg01no318_j13.b1 CHROMAT_FILE:
MSMg01no318_j13.b1 PHD_FILE: MSMg01no318_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:48 2005
         (290 letters)



>mm_chr8_9271025_9271714
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagaagaatacacaggagtccaaactagaggaggtttcccacataatcccctcctattt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 490 gtagaagaatacacaggagtccaaactagaggaggtttcccacatattcccctcctattt 431

                                                                       
Query: 61  agctcttctaaactttgtcagtcttctgatacctttgagtgactcataaaatacaagtca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 430 agctcttctaaactttgtcagtcttctgatacctttgagtgattcataaaagacaagtca 371

                                                                       
Query: 121 attgtgttcctatgaagttttcccacagcagtaaggtaaggctcactttgtcttcataga 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 370 attgtgttcctatgaagttttcacacagcagtaaggtaaggctcactttgtcttcataga 311

                                                                       
Query: 181 gcttgtgactggggggtggtggtcattgtttagaacatattatcttatatgccattcaca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtttgtgactggggggtggtggtcattgtttagaacatattatcttatatgccattcaca 251

                                                             
Query: 241 ttccaaatattttgtaggcagggggtgttgataacctctgtggttcagta 290
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttccaaatatcttgtaggcagggggtgttgataacctctgtggttcagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)