BAC Information

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BAC

Clone NameMSMg01-318O14
Chromosome8 (Build37)
Map Location 59,965,712 - 59,965,937
singlet/doubletsinglet
Overlap geneSap30
Upstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1
Downstream geneHmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318O14.T7 (MSMg01no318_o14.b1)MSMg01-318O14.TJ (MSMg01no318_o14.g1)
ACCAG438576AG438577
length739735
length of high quality
(start - end)
226 (423 - 648)295 (432 - 726)
definitionCHROMAT_FILE: MSMg01no318_o14.b1 PHD_FILE: MSMg01no318_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:10 2005CHROMAT_FILE: MSMg01no318_o14.g1 PHD_FILE: MSMg01no318_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAAGATCCGCGGAATTCTCTG
AAACTTCCCAGCTAGACCAAAACAGCAGACGTGCATAAAGACAGAAAAAG
AAATCCCGATGGCTGCCCAGAGGGCTGTAAAACCGCAGAGGCTTATTTGC
AGCCTTGGTTCGGAGCAGCTGCCCGAAGAGCTGACACCGCAAACAACGTT
TACAACCATCTATCTCCCTGTAAGGCAACTGGTGAGCTCAGCTTGCTTGT
CTGTGTTCAAGAGAAAGAGAACAACGAAGAGGAAAGAAAAAAAGAAAAGA
CAAAAAGGAAAAAAATATTTATTAGAGAGAGAGAGAATTGTGGGGTCCAG
CCAGACTCTACTTTCCCTAGAGGAGCGAAGCTGCTCCCTAGGGCAGACAC
CGGCTCTGGCTTCCCCACCCCCCGCCTCCATTCCAGAAGGGACTGCCCGG
CTGCGAGAAAACTACTCCGGGCCCTCGGTGCTGCGGTCCCCTTTGTTTCG
TTTCCAGATCGCAGCAAAGGAGGAAGAGGGAAGCCTGGCGTGGGAGACAC
GCGAGGCAGCGGGAGTCCGGGCGAGGGGCGGAGGAGCCCCGCACCACTGC
GCGAGCGCGCGCTGGGGAAGGTGGCCGGAGTTGCAGGGACTTTGTTTCAA
TCAGAGAACCACTAATCCCACCTGCAACCCATTCCCCGAGACTCGTGAAC
CCCGCCAACCATCCGGCGAGGCACGCAGGATAGGGCAGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCCGAAATCACCACAGTAAATCTCAGCAAGGGCCATTTAAGCAAA
ATTCATGATGTGAGCCAGTGTAGTACTAAACTATGTGAAATATACCCAGA
AAAAAAGTCATACAATTCTATGTTCCAAAAAATGATGGTTAAAAATACTA
ATAAAATGTGACCTCAATTTTTTAAAATAAAAGATGAGAGGAATGGCAAA
GAAAAAGTTCAAAAGTTAATATTAATCACCCCATGCAGTTATCTAGGCTA
TGATACTCCTCAGTGTGTGATTTAATTCTCAATAGAACAAACTAGTCAAT
GTTTGTATTATTTTCACATCACTCACACAATATTATAATGCCTTGTGTTT
TAAATATATTTCCCCCACCCCTCCACGATGAAATGAATGTAACTTTTATC
TGCCAGATATAACTGTCATCTTGGAGGCTTATTGCTGAATAAACTCACCC
TTTCTAGTTCTTTTTGAACTCTGGCTACACCTGATCTGGCTGAAAACTCC
TCTCCAAGATGACTGATTAAAACTGGCTTTTTTTCCGGCTTCTGACTGAA
TTGCTCTGCTTGACCTCAAACTAACTCTGGCAATCTGATCTAATCTTCTG
ACTGCTCTGCTTGACCTCAAACTAACTCTGGCAATCTGATCTAATCTTCT
GATTGCTCTGCTTGACCTCAAACTAACTCTGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_o14.b1 MSMg01no318_o14.b1 CHROMAT_FILE:
MSMg01no318_o14.b1 PHD_FILE: MSMg01no318_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:10 2005
         (226 letters)



>mm_chr8_59965512_59966137
          Length = 626

 Score =  437 bits (226), Expect = e-127
 Identities = 226/226 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgcctccattccagaagggactgcccggctgcgagaaaactactccgggccctcggtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgcctccattccagaagggactgcccggctgcgagaaaactactccgggccctcggtgct 260

                                                                       
Query: 61  gcggtcccctttgtttcgtttccagatcgcagcaaaggaggaagagggaagcctggcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggtcccctttgtttcgtttccagatcgcagcaaaggaggaagagggaagcctggcgtg 320

                                                                       
Query: 121 ggagacacgcgaggcagcgggagtccgggcgaggggcggaggagccccgcaccactgcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagacacgcgaggcagcgggagtccgggcgaggggcggaggagccccgcaccactgcgc 380

                                                         
Query: 181 gagcgcgcgctggggaaggtggccggagttgcagggactttgtttc 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcgcgcgctggggaaggtggccggagttgcagggactttgtttc 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)