BAC Information

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BAC

Clone NameMSMg01-319D08
Chromosome8 (Build37)
Map Location 53,189,210 - 53,189,426
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319D08.T7 (MSMg01no319_d08.b1)MSMg01-319D08.TJ (MSMg01no319_d08.g1)
ACCAG438796AG438797
length733722
length of high quality
(start - end)		293 (70 - 362)345 (69 - 413)
definitionCHROMAT_FILE: MSMg01no319_d08.b1 PHD_FILE: MSMg01no319_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:31 2005CHROMAT_FILE: MSMg01no319_d08.g1 PHD_FILE: MSMg01no319_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGGGCACCTCACACTAGTTGAATATTTAAGGATTGTTAGTGCTATTGTT
CGTATGTCAAAGCAACATTTGCCACTGGGTGTACATATGTATGTTAACGT
GTGCACATGTATGGAATGTGATAAACTGTTTAAGATTATAGTCATTAGTA
TACAGTTTGGCTCTAGACCTGTAGACTATCTACTTTTGTGTTCCTAGTAA
ACAAAGCAGTGTCAGGTGCTCTTTGCTCCTTTTCTTTTTTTTTTTTTTTT
CTTTTTTTAAATTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCT
ATACCAAAAGTCCTTTTTACCCACCCACCCCCACTCCCCTACCCACCCAC
TCCCGTTTTTGGCCCCCCCCCTTCCCCAGAACTGGGACATATCATTTTTG
CAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATTTTTT
GATACATATGCAGCTAGAGTCAAGAGCTCCAGTGTACTGGTTAGTTCATA
ATGTTGTTCCCCCTATAGGGTTTGCAGATCCCCTTTAGCTCCTTTGGTAT
TTTCCCTACCTCCTCCATTGTAAACCCTGTGATCCCTCCTTTAATTGACT
GTGACTCTCCACTTCCGTGTTTGCTAGGCCCCGGGTTATTCTCCCAAAAC
ACAGTCTACCTCTGGTTCCCTTTCTATTCATTG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTT
GTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATT
GAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCA
TAAAATGAGTCCCCCACACCACCTTCTACTTCTATTTTGTGAAATAGTTT
GTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACT
GCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATC
CTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGT
CCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTACAAGGATCTGATG
TTGTTTTGGATTTCTTCAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_d08.b1 MSMg01no319_d08.b1 CHROMAT_FILE:
MSMg01no319_d08.b1 PHD_FILE: MSMg01no319_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:31 2005
         (293 letters)



>mm_chr8_53189104_53189796
          Length = 693

 Score =  354 bits (183), Expect = e-102
 Identities = 208/217 (95%), Gaps = 2/217 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatatttaaggattgttagtgctattgttcgtatgtcaaagcaacatttgccactggg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 323 tgaatatttaaggattgatagtgctattgttcgtatgtcaaagcaacatttgaaactggg 264

                                                                       
Query: 61  tgtacatatgtatgttaacgtgtgcacatgtatggaatgtgataaactgtttaagattat 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtacatatgtatgttaaggtgtgcacatgtatggaatgtgataaactgtttaagattat 204

                                                                       
Query: 121 agtcat--tagtatacagtttggctctagacctgtagactatctacttttgtgttcctag 178
           ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 agtcattgtagtatacagtttggctctagacctgtagactatctacttttgggttcctag 144

                                                
Query: 179 taaacaaagcagtgtcaggtgctctttgctccttttc 215
           ||| |||||| ||||||||||||||||||||||||||
Sbjct: 143 taaccaaagctgtgtcaggtgctctttgctccttttc 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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