BAC Information

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BAC

Clone NameMSMg01-319M02
Chromosome8 (Build37)
Map Location 98,699,761 - 98,699,942
singlet/doubletsinglet
Overlap genenone
Upstream geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319M02.T7 (MSMg01no319_m02.b1)MSMg01-319M02.TJ (MSMg01no319_m02.g1)
ACCAG439184AG439185
length701734
length of high quality
(start - end)
74 (167 - 240)182 (133 - 314)
definitionCHROMAT_FILE: MSMg01no319_m02.b1 PHD_FILE: MSMg01no319_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:08 2005CHROMAT_FILE: MSMg01no319_m02.g1 PHD_FILE: MSMg01no319_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTAAATTTGCGGCCGCAAAGACTCCTAAATCAGAGGGGGGCGGAATCT
CCCTTACCAAACGATGGTGATAACCCTGACAAGTGTTCAACATCCTTAAT
CTTAGCAAAGCAAATCAAAAAACCTTGAGATCCCCTCACACCAGTCAGAA
TGGCTAAATCAAATTCAGGCAACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGCTGGGAGATTGCAGCTTGTGCACCCTCTGG
AAGCAGTCTGGAGTTCCTCAGAAAATTGAACATAGTACTACCGGAAGATC
CAGCAATACCTCTCCTGAGCTATACGCAGAAGATGTCCCAACTGGTAATA
AGAATACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGACAAT
GTGGCACCCAATGGAACACTACTCATCTATTAACAACAATGTAATTTACG
AAATTCTTTGGGCAAAATGCATATATCTGGAGGCAAATCATACCTTAAGC
GAGGCACCCCACTTCTTAAAAGAAACCATCTAGTTAAGGCCCTCCTTGGA
CAAGCGCAATATTAAGCTCCAGTCAACCTACCCCCCCCCCCTTTATACAA
ATTCTGCTATACCACACACCCTAATCCTATACAGAACGGAACTACCCCTC
G
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATAGGGGTGAC
CTATAGAAGTTACGAAAAACGCCGGGAAAAGGCACTCTCGGTTTTCTGTT
CAAGTCCAGGAGTATCATACTGAACACAGAGTGGAACTTTTATTAGATGA
ACTTAACTATGTCTACTACTCTCAGCTCCAACATCACCCCTTCCCCACTA
GTCACTCAAGGACTCTCTCTTTGAGAACAGAGATGTTTCAACAACAAGTA
CTGTTTGCTAGTCCCATTGCTGTGATAAAATACCCACAAAAGCGACTTCA
AGAGGGCAAAGCCCTTGATGTTCAAGAGTGAGACTGGGAATATGGCATGC
TGGTCCCAGTATTCTTGTGGTGACGAAGCAGGGGTGAACACTGCTGCTCC
CCAGATTTTGATGCAAATAGCTTATATTTAAGCTGGCTCCTCCCTCCTCA
GTTTAATCTCGCTGGAAATGCCTCATACGACACACCCATAAGTGTGTCCC
CCGTCTGATTCACACAATCTATTTCAACCTGATCGTGGAATCGTACGCAT
CTTATCCGAGTTTCCAGAAACACCGTTTATCCCGCTTCCCCCAATGGATT
CGCCCGACCCACGCCCTCGTTATCGCAGGTATCACTGAAACGTATAACAG
CGTTTCACTGGCATCGATGAAAATATTGTGACGATTGGACATTCTCTAAC
ATTCAATGTTTGGCTCACCTGGTCATGGTCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_m02.g1 MSMg01no319_m02.g1 CHROMAT_FILE:
MSMg01no319_m02.g1 PHD_FILE: MSMg01no319_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:08 2005
         (182 letters)



>mm_chr8_98699561_98700142
          Length = 582

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaacttttattagatgaacttaactatgtctactactctcagctccaacatcacccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaacttttattagatgaacttaactatgtctactactctcagctccaacatcacccctt 260

                                                                       
Query: 61  ccccactagtcactcaaggactctctctttgagaacagagatgtttcaacaacaagtact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ccccactagtcactcaaggactctctctttgagaacagagatgtttcaacaacaagtagt 320

                                                                       
Query: 121 gtttgctagtcccattgctgtgataaaatacccacaaaagcgacttcaagagggcaaagc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gtttgctagtcccattgctgtgataaaatacccacaaaagcgacttaaagagggcaaagc 380

             
Query: 181 cc 182
           ||
Sbjct: 381 cc 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)