BAC Information

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BAC

Clone NameMSMg01-319O22
Chromosome8 (Build37)
Map Location 25,684,121 - 25,719,632
singlet/doubletdoublet
Overlap geneIndol1, Indo, Adam18
Upstream geneLOC100040931, Zmat4, 1810011O10Rik
Downstream geneAdam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319O22.T7 (MSMg01no319_o22.b1)MSMg01-319O22.TJ (MSMg01no319_o22.g1)
ACCAG439308AG439309
length744741
length of high quality
(start - end)		630 (38 - 667)556 (68 - 623)
definitionCHROMAT_FILE: MSMg01no319_o22.b1 PHD_FILE: MSMg01no319_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:20 2005CHROMAT_FILE: MSMg01no319_o22.g1 PHD_FILE: MSMg01no319_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,684,121 - 25,684,746)(25,719,077 - 25,719,632)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
TGGTATTTTCACAGATTCGAGGAGCAAAGTTCCATAGAGACACTAAAAAT
TGGAAGTCTTTGATTTGACAGAAACAGCTGGATAGGGTAATTTATACCCT
TGAACTTGCTAGCCAGCTAGGTTTTCTTAAGTGAGACTTTCTGAAAGAGA
TGGGGAAGGTCTGCCACCTACCACTTGCCCTTGGCCCAAGAAGAACAGGT
CTTGGCTATGCCCTAGGGCACTGGACTGGGCCAAACCCACTGTTCTTTCC
CAACCAGTGTAAAGTTGCAGGACTGTTTGTCCAGTGAAGTCGAACTGAGT
CTGTCTTGACCTTTGGAGCAGCCAGGACCTGATCCTAGTCAAGGTTTCTT
CCTCTTCCTTTAACCAAAAAGACATTGAAAACCATCACTTGAATGAAAGA
AAATTGAAACAGAAAGAATCATATTGAAATTACTGGGCTATAAATGAGTA
GCTGGGTGGGACAGGGAATATTTCCTTTCTGTGTGAACAGCACTAGGGAC
CTCTTTTAAGGGGTACCCATCCATCACACCATACCATAGAACCTTTCTAA
CAAATAGGGGGGAAACTTGATGTTGCTATTGTGTCTTATCTGTATGTCTG
CCTGGTCCCAGTATTTACNAAGAGGAAAGCAGCCCAGAAAGCCCCAGAGC
TATGGCCTGCCCTGATATTCGTTCCCCTGCTTGGCAGTGTTCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTATGAAGAAAAAGGAAAAACAGACTCAAAAG
GAATGCTTGATGTTGGATGCTAATGAGAGGATTGTTTATCCTGCAAATAA
CGTACTCAGAGCCCCTGCATAGTTAATTAGCAGAGGAGAAAGTGTTTTTT
TCCTTATAGAAATATATTCATTTTCCTTATGTGTGTCAGCTCTTGGTGCA
GTCTAATAGGTCGTGGAGCTGTTCAGAGATGACTCCTGGCCTTGGAAGTG
ATAACCCAGCCTTGCTTCCCTTCCCACCCAGTTCACTTGGCACTTGCCGC
TCAGCCCTCACGGTGCACCCCACCTCTCTGTGCCCCTGCCAGCATGGACC
AAGCAATTCCGGCTGCCACGCCTTCTCTACCACAGCAGACTGAAATTCCC
CGAAACCATAAGCCTAGATCTCAATTATGTTTTCCACAACACTGAATATA
TATATGACTTATATATATGACTTTAGGATCAATAAAAATGAAAGACCTAA
GTGTACATGTTTCAGGCCCACCGGGAGATCTCAACGCCATGCTTGGCTAA
GGAAATTGCAACTGTGCTTAGCGTGCCGGCTGGNGCATGGTTGTCACCAG
GTGCCTTCAGCCATGCTGATGGCCAATGTAAAAGGGAAAGTAGAACAGAA
GGATGTGAAAACTTGCGGGTTCTGCGCATAAGAATATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_o22.b1 MSMg01no319_o22.b1 CHROMAT_FILE:
MSMg01no319_o22.b1 PHD_FILE: MSMg01no319_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:20 2005
         (630 letters)



>mm_chr8_25683917_25684946
          Length = 1030

 Score = 1180 bits (610), Expect = 0.0
 Identities = 622/626 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtggtattttcacagattcgaggagcaaagttccatagagacactaaaaatt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtggtatttttacagattcgaggagcaaagttccatagagacactaaaaatt 264

                                                                       
Query: 65  ggaagtctttgatttgacagaaacagctggatagggtaatttatacccttgaacttgcta 124
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaagtctttgaattgatagaaacagctggatagggtaatttatacccttgaacttgcta 324

                                                                       
Query: 125 gccagctaggttttcttaagtgagactttctgaaagagatggggaaggtctgccacctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccagctaggttttcttaagtgagactttctgaaagagatggggaaggtctgccacctac 384

                                                                       
Query: 185 cacttgcccttggcccaagaagaacaggtcttggctatgccctagggcactggactgggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacttgcccttggcccaagaagaacaggtcttggctatgccctagggcactggactgggc 444

                                                                       
Query: 245 caaacccactgttctttcccaaccagtgtaaagttgcaggactgtttgtccagtgaagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaacccactgttctttcccaaccagtgtaaagttgcaggactgtttgtccagtgaagtc 504

                                                                       
Query: 305 gaactgagtctgtcttgacctttggagcagccaggacctgatcctagtcaaggtttcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaactgagtctgtcttgacctttggagcagccaggacctgatcctagtcaaggtttcttc 564

                                                                       
Query: 365 ctcttcctttaaccaaaaagacattgaaaaccatcacttgaatgaaagaaaattgaaaca 424
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcttcctttaacaaaaaagacattgaaaaccatcacttgaatgaaagaaaattgaaaca 624

                                                                       
Query: 425 gaaagaatcatattgaaattactgggctataaatgagtagctgggtgggacagggaatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaagaatcatattgaaattactgggctataaatgagtagctgggtgggacagggaatat 684

                                                                       
Query: 485 ttcctttctgtgtgaacagcactagggacctcttttaaggggtacccatccatcacacca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcctttctgtgtgaacagcactagggacctcttttaaggggtacccatccatcacacca 744

                                                                       
Query: 545 taccatagaacctttctaacaaataggggggaaacttgatgttgctattgtgtcttatct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taccatagaacctttctaacaaataggggggaaacttgatgttgctattgtgtcttatct 804

                                     
Query: 605 gtatgtctgcctggtcccagtattta 630
           ||||||||||||||||||||||||||
Sbjct: 805 gtatgtctgcctggtcccagtattta 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no319_o22.g1 MSMg01no319_o22.g1 CHROMAT_FILE:
MSMg01no319_o22.g1 PHD_FILE: MSMg01no319_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:20 2005
         (556 letters)



>mm_chr8_25718877_25719832
          Length = 956

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgaagaaaaaggaaaaacagactcaaaaggaatgcttgatgttggatgctaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 756 tttatgaagaaaaaggaaaaacagactcaaaaggaatgcttgatgttggatgctattgag 697

                                                                       
Query: 61  aggattgtttatcctgcaaataacgtactcagagcccctgcatagttaattagcagagga 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 696 aggattgtttatcctgcaaataacgtactcagagcctctgcatagttaattagcagagga 637

                                                                       
Query: 121 gaaagtgtttttttccttatagaaatatattcattttccttatgtgtgtcagctcttggt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaaagtgcttttttccttatagaaatatattcattttccttatgtgtgtcagctcttggt 577

                                                                       
Query: 181 gcagtctaataggtcgtggagctgttcagagatgactcctggccttggaagtgataaccc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 576 gcagtctaataggtcgtggagctgttcagaggtgactcctggccttggaagtgataaccc 517

                                                                       
Query: 241 agccttgcttcccttcccacccagttcacttggcacttgccgctcagccctcacggtgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agccttgcttcccttcccacccagttcacttggcacttgccgctcagccctcacggtgca 457

                                                                       
Query: 301 ccccacctctctgtgcccctgccagcatggaccaagcaattccggctgccacgccttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 456 ccccacctctctgtgcccctgccagcatggaccaagcaattccggctgccatgccttctc 397

                                                                       
Query: 361 taccacagcagactgaaattccccgaaaccataagcctagatctcaattatgttttccac 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taccacagcggactgaaattccccgaaaccataagcctagatctcaattatgttttccac 337

                                                                       
Query: 421 aacactgaatatatatatgacttatatatatgactttaggatcaataaaaatgaaagacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aacactgaatatatatatgacttatatatatgactttaggatcaataaaaatgaaagacc 277

                                                                       
Query: 481 taagtgtacatgtttcaggcccaccgggagatctcaacgccatgcttggctaaggaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taagtgtacatgtttcaggcccaccgggagatctcaacgccatgcttggctaaggaaatt 217

                           
Query: 541 gcaactgtgcttagcg 556
           ||||||||||||||||
Sbjct: 216 gcaactgtgcttagcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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