BAC Information

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BAC

Clone NameMSMg01-320I14
Chromosome8 (Build37)
Map Location 83,932,336 - 83,932,566
singlet/doubletsinglet
Overlap genenone
Upstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320I14.T7 (MSMg01no320_i14.b1)MSMg01-320I14.TJ (MSMg01no320_i14.g1)
ACCAG439743AG439744
length765767
length of high quality
(start - end)
232 (185 - 416)275 (132 - 406)
definitionCHROMAT_FILE: MSMg01no320_i14.b1 PHD_FILE: MSMg01no320_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:04 2005CHROMAT_FILE: MSMg01no320_i14.g1 PHD_FILE: MSMg01no320_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTTTTTTTTCCGTTTTTCTTTTTTTCTCTTNTTCCTCCCAAATAT
NNGCCGCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATGTTCCTTGATTTCCTGAGACAATTTTATAAAT
GCCAGTTGATGCTTAAATTCATTATTATGCGTTGAATGGTATTTTGTGGA
CCACCCTCGACTCTAAATATTTGTAATGACATTTTAATCGGATAGGACCC
CCAAGGTAGCCATTTAACAACAAACTTTTGGGTTACAGACTGTGCATGAT
TTGGAGTCCACATGAAATCTGTGACATCTAGAACCATCAAGAACACAAGG
AAGCTGGTAACATGGTTCAGAGGGTGAAAGTACCTGCTGTCAAACCTGGT
CACCTAGGTTCTATGTTTGTTACTACCATGGCATAAAGAAGAAAAATTAG
TTCCAAAAATTACCCCTTTACCCTGATATGATCACAGTGACACGCATGTA
AACACACACACACAAACACACACACACACACACGCACATACACACACACA
CAACCTTAAAGAAAAGTTTTAAAGTGTAGTCAAAGAAAGCCATGAGGAAA
GTTTTCACATTGGTGGCATATGTCCACTCTCCTGTCAGAAAAGCAGGTCC
CCAGATTCGTTGCACACATTTAAACTATTGCCATTCTTCATTCATCTGAA
TCAATATTGAGTCAGCCAATATAGCTACAGCATTTTCCAGCTGTTTTCCT
ACATTTCATGTTCAA
TTGCCNNNACCCCNCNTATCCCCTTCTAATTTTATTCGATATATGTTTTN
NCTTCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTTGAGAACTCTGGG
TGCCTTTCATTTAGAGCATAGATGCCTCAGAATTGAGAGTTCTTCTTCAC
AGAATTTTTCTTTGATGAGTATGAAGTGTTCTTCCTTACCTTTTTTTTTT
TTTTGATGACTTTTGGTTGAAAGTCGATTTTATCCAATATTACAATGGCT
ACTCCAGGTTCTATCTTAGGATCATTTGCTTGGAAAAATTGTTTTCTAGC
CCTTTACTCTGAGATAGTGTTTGATTTTGACACTGAGATTCATTTCCTGG
ATGCAGAAAATGGGTGGGTCCCGCCTACATACCCCGTCTGTTAGTCTATG
TCTTTTTATTGGGGAATTGAGTTCAAAGAAGAAAAGAGATATTAGGGAAT
AGGGATTGTTCCTCCCTGGTATTATTGATGTTATTTTTATGTTTGTGTGG
CTATCTTCTTTTGGGTTTGCTGAAAAACGATTACTTTCTTGCTTTTTCTT
TTTCTTTTCTTTTTTATTTCTTTTTTTAAAATTTATTACATATTTTCCTC
AATGACTTTTCCAATGCTATCCCTAAAGTTCCCCATATCCTTCCCCCCTC
CTCTTTTACTACCCACCCATCTTTTTTTTTGTTCTCCGGATCTTGGTGTT
CTCTTTGTCTTGGGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_i14.b1 MSMg01no320_i14.b1 CHROMAT_FILE:
MSMg01no320_i14.b1 PHD_FILE: MSMg01no320_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:04 2005
         (232 letters)



>mm_chr8_83932136_83932767
          Length = 632

 Score =  447 bits (231), Expect = e-130
 Identities = 231/231 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggtattttgtggaccaccctcgactctaaatatttgtaatgacattttaatcggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatggtattttgtggaccaccctcgactctaaatatttgtaatgacattttaatcggata 372

                                                                       
Query: 61  ggacccccaaggtagccatttaacaacaaacttttgggttacagactgtgcatgatttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggacccccaaggtagccatttaacaacaaacttttgggttacagactgtgcatgatttgg 312

                                                                       
Query: 121 agtccacatgaaatctgtgacatctagaaccatcaagaacacaaggaagctggtaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtccacatgaaatctgtgacatctagaaccatcaagaacacaaggaagctggtaacatg 252

                                                              
Query: 181 gttcagagggtgaaagtacctgctgtcaaacctggtcacctaggttctatg 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gttcagagggtgaaagtacctgctgtcaaacctggtcacctaggttctatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)