BAC Information

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BAC

Clone NameMSMg01-320J13
Chromosome8 (Build37)
Map Location 40,828,417 - 40,828,638
singlet/doubletsinglet
Overlap geneLOC100039072
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431
Downstream geneLOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J13.T7 (MSMg01no320_j13.b1)MSMg01-320J13.TJ (MSMg01no320_j13.g1)
ACCAG439788AG439789
length727731
length of high quality
(start - end)
347 (381 - 727)222 (438 - 659)
definitionCHROMAT_FILE: MSMg01no320_j13.b1 PHD_FILE: MSMg01no320_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:08 2005CHROMAT_FILE: MSMg01no320_j13.g1 PHD_FILE: MSMg01no320_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTACATTGCATATTAGAAGAAAGTTGGTGGGTTCCTCTGTTAA
ATGGAGGTTCCCTACAGATTCACCCAATAACAGCTAAGTCATTCCCATAT
ACAGTAGTTTACAATGGCCTAGGAAGAAGATTGGTTGTGGTATAAATACT
TAGAATAACTGCTGAGTCATTCCCATATAAAGGAATTTACAATGGCCTAG
GGAGAGAGAAGGTGGATTTTACAATAGACTAGAATTGCAAGGGCATAAAG
CCCTTGCTCCTGGCTTCTAAGAAGAACCTGACCTTAGGTGTGGCTGATTT
TTATCTCAGTTGTATTTACTGATTTTCGTTCCAGTTGTAAATACTGCCTG
GTTCCTGATAACTTTTATGTAATGCATTTCTCTGTTTTGTGTAAAGAGTC
ATTTTGCATCAGGTAACCTCAATGTACCTTGGATGACCTTAATGTATTAC
TTAACTTCCTTGCTTTCTTTTGTAATAGAAGTCTGATGCTTGCTTTGAGA
CATTCCATTCAGATCCAACACTCTCCCTGGTGTTCCTGTCTATCTGACAT
TTTTTCACTGATTCCTTGCCACCCTAAGTACTAAATCTCTGATTTTCCTG
CTGGTTGAGGGACCACATGAGTCCAGTCCATGGCACATATGTATGTTGGC
TTTCTATCATTTATGTTGTTATTGAAA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCAGAAAAATTCTTTCTCATATCACAAAATGACTTC
CTTCTTTTATTGGATATTTTCTTCATTTACATTTCAAATGATATCCCCTT
TCCAAGTCTCCCCTCCAGAAATCCTCTATTTCATTCCTGCTCCCCATGCA
TCTATGAGGGTGCTCCCCCCACCACATCCACTCACTCCAGCCTTTCTGCC
TTGGTATTCCCCTACACAGGAGCATCGAACCCCCTCAGGCCCAAGGGCAG
CTTCTGCCACTGATATCCTTTTTAGTTCATGCTCTGCCACATTTGTGGCT
AAAGCCATGTTTTCTTTTTTGTCCCCCCTCCAATTGGTGGTCCACTCCCA
GGGAGCTCCAGGGGATCTGGGCAAATAACAATAAATCTGCCCCCATGGGG
CTGCAAACCCCTCAGCTCCTTCAGTCTCTTTTTCAACTCCTCCATCAGGG
GCCCCCACTCTCCTATACAAAAGAAGTAATTGTACAAAGATGGTTAAAAT
GAAGTAGAAGAAAGACAATGATGGCCCTGTAAATAAACTTCCGATTAAGC
AGAAATGGAGCTATCCAAGAAATGGAATGCAAGTATACTGTCGTGTGACA
TTTGGGATATTTGCCCATGCACAACAATGACAAAAAATCATCATTGCAAA
TGGGGCAATCGCTTGTGATCCATCGATTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j13.g1 MSMg01no320_j13.g1 CHROMAT_FILE:
MSMg01no320_j13.g1 PHD_FILE: MSMg01no320_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:08 2005
         (222 letters)



>mm_chr8_40828217_40828838
          Length = 622

 Score =  422 bits (218), Expect = e-122
 Identities = 221/222 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccccatggggctgcaaacccctcagctccttcagtctctttttcaactcctccatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcccccatggggctgcaaacccctcagctccttcagtctctttttcaactcctccatca 260

                                                                       
Query: 61  ggggcccccactctcctatacaaaagaagtaattgtacaaagatggttaaaatgaagtag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcccccactctcctatacaaaagaagtaattgtacaaagatggttaaaatgaagtag 320

                                                                       
Query: 121 aagaaagacaatgatggccctgtaaataaacttccgattaagcagaaatggagctatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaagacaatgatggccctgtaaataaacttccgattaagcagaaatggagctatcca 380

                                                     
Query: 181 agaaatggaatgcaagtatactgtcgtgtgacatttgggata 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaatggaatgcaagtatactgtcgtgtgacatttgggata 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)