BAC Information

Click to search

BAC

Clone NameMSMg01-320L15
Chromosome8 (Build37)
Map Location 31,085,037 - 31,085,324
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L15.T7 (MSMg01no320_l15.b1)MSMg01-320L15.TJ (MSMg01no320_l15.g1)
ACCAG439887AG439888
length727731
length of high quality
(start - end)
346 (382 - 727)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no320_l15.b1 PHD_FILE: MSMg01no320_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:18 2005CHROMAT_FILE: MSMg01no320_l15.g1 PHD_FILE: MSMg01no320_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCATGGACATGCAAATCAAAACAACCCTGAGATTC
CACCTGACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTTTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGA
AAAATCGACATAGTACTACAGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAATATGTCCCAATTGCCACCAACGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGGAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAAGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAG
AAATGAAGACCGAAGTGTGGACACTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGCACAGGTGTGATTTCAGGA
AATTAAAGAAGCTTAATAAAATGAAGGAAAGCTAACAGGGCTTCAGCAAG
TAGAAAGGAGTCAGTTACAGGACAGGATACACACTTGTATAACGAGGTAC
GGACTCAGGCCAGATGTTGGGTTGTGCACCTGGGAGTCATACATAATGGT
TAGAGGAGTTGCTTCTATAAGGTCTTGTGTCCTGTTCTGCTCCAGGTGCA
TAGGTTGAAACCCCATTTTTCCTCTGACTGTATTTGGACATGAGGTCTTT
GAGAAGGTAATTATTGTTAAATTCCCCCCCCACGCCAGGAACCATAGAAA
ATGGAGTTGATGTCCTTTTAAAGGAGAAAAAGACATCTGGGCTCTGTAGT
GTTCTACATGTTCCCGTTCTGTCTTCCTGCTGCACACATAAAGAGGAGGC
CGGGAAAGAAACAGCAACAAGACTTGTCTGCAGCCAGGAAAACAAATTTC
CACTAGAGGCCGAATATGCAGTTGTCTATGCTATGCCATCAACTTACTAA
TCCAGAATATTAAGAAGAGAGGGAGAGAGAGAGAGAGGGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGACAGAGAGACCCTTAGTTGCTCCTCCCCT
CCTTTCCCCCCTCCCCACTTTCTCTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l15.g1 MSMg01no320_l15.g1 CHROMAT_FILE:
MSMg01no320_l15.g1 PHD_FILE: MSMg01no320_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:18 2005
         (288 letters)



>mm_chr8_31084837_31085524
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggcacaggtgtgatttcaggaaattaaagaagcttaataaaatgaaggaaagctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggcacaggtgtgatttcaggaaattaaagaagcttaataaaatgaaggaaagctaac 260

                                                                       
Query: 61  agggcttcagcaagtagaaaggagtcagttacaggacaggatacacacttgtataacgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggcttcagcaagtagaaaggagtcagttacaggacaggatacacacttgtataacgag 320

                                                                       
Query: 121 gtacggactcaggccagatgttgggttgtgcacctgggagtcatacataatggttagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacggactcaggccagatgttgggttgtgcacctgggagtcatacataatggttagagg 380

                                                                       
Query: 181 agttgcttctataaggtcttgtgtcctgttctgctccaggtgcataggttgaaaccccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgcttctataaggtcttgtgtcctgttctgctccaggtgcataggttgaaaccccat 440

                                                           
Query: 241 ttttcctctgactgtatttggacatgaggtctttgagaaggtaattat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcctctgactgtatttggacatgaggtctttgagaaggtaattat 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)