Query= MSMg01no320_m01.b1 MSMg01no320_m01.b1 CHROMAT_FILE:
MSMg01no320_m01.b1 PHD_FILE: MSMg01no320_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:20 2005
(324 letters)
>mm_chr8_30241753_30242476
Length = 724
Score = 474 bits (245), Expect = e-138
Identities = 263/271 (97%), Gaps = 4/271 (1%)
Strand = Plus / Minus
Query: 57 tgtgtgtgtgtgtgtgtttctcccctacccttacagtgtgttctcctaatcttatgaata 116
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 487 tgtgtgtgtgtgtgtgtttctcttttacccttacagtgtgttctcctaatcttatgaata 428
Query: 117 aaactttattgagcatcacaatgccggagcacgctagaagctgagcaggaaaaatgaaga 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaactttattgagcatcacaatgccggagcacgctagaagctgagcaggaaaaatgaaga 368
Query: 177 cagacaacgaagggagaggtcgaagcagacggtcagaaagcagaagacacacattgaaag 236
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caggcaacgaagggagaggtcgaagcagacggtcagaaagcagaagacacacattgaaag 308
Query: 237 gcagtgtgtgcatagcttgatttgtc----ataaataaataaataaataagcagaagact 292
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 307 gcagtgtgtgcatagcttgatttgtcataaataaataaataaataaataagcagaagact 248
Query: 293 ttccagagcccaaagtacaggatttccagtg 323
|||||||||||||||||||||||||||||||
Sbjct: 247 ttccagagcccaaagtacaggatttccagtg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no320_m01.g1 MSMg01no320_m01.g1 CHROMAT_FILE:
MSMg01no320_m01.g1 PHD_FILE: MSMg01no320_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:20 2005
(624 letters)
>mm_chr8_30084677_30085701
Length = 1025
Score = 1147 bits (593), Expect = 0.0
Identities = 617/625 (98%), Gaps = 1/625 (0%)
Strand = Plus / Plus
Query: 1 ctgggaactggagttactgagagttgtgaggtgcatgtgggtgcaggtatcaaatctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggaactggagttactgagagttgtgaggtgcatgtgggtgcaggtatcaaatctaga 260
Query: 61 tcatctggaaaaacagtgagtccttctaacctctgagttatctctccagccattaatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatctggaaaaacagtgagtccttctaacctctgagttatctctccagccattaatgtt 320
Query: 121 ttctatattaataaatgagccacattgttataagcagcattgtagaat-aaataatttgt 179
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 321 ttctatattaataaatgagccacattgttataagcagcgttgtagaataaaataatttgt 380
Query: 180 acaaaagaaattcccgaaagcatccttttgtttccaaaccactttacacagacctctgtc 239
||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataagaaattcctgaaagtatccttttgtttccaaaccactttacacagacctctgtc 440
Query: 240 agtgtgcatttaagttcgttgtaattatttcagtatgcttttctttagtggcatttttat 299
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 441 agtgtgcatttaagttcgttgtaactatttcagtatgcttttctttaatggcatttttat 500
Query: 300 ttatttcctttctgtttatggcttctgcccaggtgtttgctcacaattctgttcaccaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatttcctttctgtttatggcttctgcccaggtgtttgctcacaattctgttcaccaac 560
Query: 360 tattcaaaatctaagtgattttggatacattctgctggaaaatgatgggaaatcaaaatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattcaaaatctaagtgattttggatacattctgctggaaaatgatgggaaatcaaaatt 620
Query: 420 tacaataagcttctgaaataaattacttgcacagtacctcatggataatactctaaagac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaataagcttctgaaataaattacttgcacagtacctcatggataatactctaaagac 680
Query: 480 aaggtaggggttaccaacaatatggtaacacatactataagagctgaaatttctagcatc 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 aaggtaggggttaccaacaatatggtaacacatactagaagagctgaaatttctagcatc 740
Query: 540 tttccctttattctagttgtacctagaaaacgctttggcatatacctaaagttctcctag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttccctttattctagttgtacctagaaaacgctttggcatatacctaaagttctcctag 800
Query: 600 cattgcatgcagtctgcttctattt 624
|||||||||||||||||||||||||
Sbjct: 801 cattgcatgcagtctgcttctattt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space: 623210
Effective search space used: 623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
