BAC Information

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BAC

Clone NameMSMg01-320O01
Chromosome8 (Build37)
Map Location 4,093,947 - 4,094,246
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071
Downstream geneCd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320O01.T7 (MSMg01no320_o01.b1)MSMg01-320O01.TJ (MSMg01no320_o01.g1)
ACCAG440001AG440002
length796727
length of high quality
(start - end)
---334 (111 - 444)
definitionCHROMAT_FILE: MSMg01no320_o01.b1 PHD_FILE: MSMg01no320_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:29 2005CHROMAT_FILE: MSMg01no320_o01.g1 PHD_FILE: MSMg01no320_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCAAATAAGGGAGGGGGGNCAAAATTTTTGAGAGGGGAAAAAAAAATGGG
GCGCGAGAGAANNNNNATTTCCGACAAGACGNNGGGGNNNNNNTTNCAAA
AAAAGGGGNGNNNNNNGGNGNNGNNNNNNNNNGNGNGNNNGGGTTTTTCC
TCCAAAAAGGGGGGAGGGGAAGGAAGANAAAAAAGGGGGGAGGAAAGAAN
AGAGAGGAGGAGAAAGAAGGAAAGAAGAGGGAGNAGAGAGGGGAAAGGGA
GGGGGGGAAGAGGGGGGGAAAGAGGGAGGATTAATGAGAAAGAGGGGAGA
AGAAAGAGGGGGGGGGGAAGAGAAAAGGGGAGAAGGGGGGAGGGGATTTT
TTGTTTAAAAGNGGAGGAGGGGAGGAGGGGAAGGGGAAGAGGTGAGGGGA
AAGGGGGAGGGGGAGAAAGAAGGGGAGAGAAGAAAGGGGAAAAAGGGACA
GGAAGGAGAAAAAAGAGAGGGGGGAGGGGGAGGAGGGGAAGGGGGGGGGA
AAGGAGGGGAAGAGGGGAGGGGAAGGGGAGAAGGGGGAGGGAAAAAGGGA
GAAAAAAAAGGAGGGGGGAGGGAAAAGAAGGGGGGAGGGAGGGGGAGAGG
AAAGGGAAGGGGAGGGGGGGGGGGAAAGGAAAAGGGGAGAGAAAAAAGGG
GGAGGGGGGAAGGGAAAAAAAAAAAAGGGGGGGGAGGAAAAGGAGAGTAA
GGGAAAAGAAGGGGAAGGAAAAGGGGGGGGGAAAAGGGGGGGAAAAAAGG
GGGGGAAGGGGGGAAGGGAAAAGGAGGGAGGGAAAAAGGGGGGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGA
AAAACTGTCAGAGAAGGGAGGGGAGACACAGTGGCAGCTTCTGATAGTTA
TTCCCCCATAAGAAAAGATGGTTGCAGGGACTGCATCGGGACCTTCATTA
GCTAATTCATCATTTAAATCTCTACCTACCTTTAGCCATTTTTTACAATG
TATCTCTGCTCCATGTATAATAAACCATGGACATGCCTGGTCTATGAAAA
TAAAAAAGTTTATCAAATCTTTCTTTTTAACTCTAACTCCTCTCTCTCTG
AGAGTTATCTTTAAGCCTTTAACGAAGGCTGCCTCTTTAGATAGCTTATT
TCTGATTTCCTGAAGTGGAGATGAATCAACTCACCAAGGACTTCTTACTC
CCGTGAGCGGTAGAAGCAGTACTTCAGTACTTTTAAATTCTTGGGGTCAT
GATAAACTTCTCTGGAACTTCCACTGGAAGGAAGTACGATCCAAACCTCG
CCCTCATGTTGGGAGCCACTTTTTCCTGTCCCTCAGGACTCAGTTATCCA
TGGGTTCGAGGGGGACCACAAACATGGGGGAAAATGGGAGGAAGAGAAAA
AGGAACTGGAGACCAAGTAGATGGTCCTATCAAGGTCTCTGTTTATTAGG
TATAAATGCCAGGTTTTAAAGCATATCTTGATGAAAATAGGCGAGGGTTT
GAATTTACCAATGAAGACAGATTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_o01.g1 MSMg01no320_o01.g1 CHROMAT_FILE:
MSMg01no320_o01.g1 PHD_FILE: MSMg01no320_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:29 2005
         (334 letters)



>mm_chr8_4093513_4094246
          Length = 734

 Score =  395 bits (204), Expect = e-114
 Identities = 277/304 (91%), Gaps = 8/304 (2%)
 Strand = Plus / Minus

                                                                       
Query: 35  tcattagctaattcatcatttaaatctctacctaccttt-agccattttttacaatgtat 93
           |||||||||| || ||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 734 tcattagctagtttatcatttaaatctctacctacctttca-ccattttttacagtgtat 676

                                                                       
Query: 94  ctctgctccatgtataataaaccatggacatgcctggtctatgaaaataaaaaagtttat 153
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctctgctccatctataataaaccatggacatgcctggtctatgaaaataaaaaagtttat 616

                                                                       
Query: 154 caaatctttctttttaactctaactcctctctctctgagagtta---tctttaagccttt 210
           ||||||||||||||||||||||||| |||| || ||||   |||   |||| ||||||||
Sbjct: 615 caaatctttctttttaactctaactactctttcgctga---ttactatcttcaagccttt 559

                                                                       
Query: 211 aacgaaggctgcctctttagatagcttatttctgatttcctgaagtggagatgaatcaac 270
           ||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 558 aacgaaggcagtctctttagatagcttatttcccatttcctgaagtggagatgaatcaac 499

                                                                       
Query: 271 tcaccaaggacttcttactcccgtgagcggtagaagcagtacttcagtacttttaaattc 330
           ||||||||||||||||||||||||||| ||| ||||  |||||||| ||| | |||||||
Sbjct: 498 tcaccaaggacttcttactcccgtgagtggtggaagtggtacttcactacctctaaattc 439

               
Query: 331 ttgg 334
           ||||
Sbjct: 438 ttgg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)