BAC Information

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BAC

Clone NameMSMg01-321D04
Chromosome8 (Build37)
Map Location 53,289,146 - 53,434,072
singlet/doubletdoublet
Overlap geneLOC623935
Upstream geneLOC667517, LOC623872, LOC100040220
Downstream gene1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321D04.T7 (MSMg01no321_d04.b1)MSMg01-321D04.TJ (MSMg01no321_d04.g1)
ACCAG440232AG440233
length734735
length of high quality
(start - end)
308 (71 - 378)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no321_d04.b1 PHD_FILE: MSMg01no321_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:53 2005CHROMAT_FILE: MSMg01no321_d04.g1 PHD_FILE: MSMg01no321_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,433,765 - 53,434,072)(53,289,146 - 53,289,436)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGCAAATTTGCAGGTTGCTTGTGAACATCACACTGAAATGGATC
TTTTGCTTTGATTTTTCTTACTGCAGCACAAATGAAAATGAAGCGATCAG
CTGATTATTGGCCATCAACACTTTGAATTATACAGCAACTACTTCCTTAT
AATAACTGTAGAAAATATTATGATGCTTTATGAGAGAAACCAATGCTCAT
TTATACTTTCTAATAAAGGATAATATTATAAAACAAAAAGTTTAAGAAAT
AATTTATATTAGAAATGTTCACTTTCTTTAACAGAAATATTGCCACAACG
TAATGAATTTAATAGATATGTTCATACATGACAATGAAAGGCCATCCATA
ATGCTTATACCTAAAATATCCCGCTTCCATTTACCTATTTATATGAATGT
TTTCCCTGACTTTATAGAGTAAGGTAACATGTCAATTTTCCCATACATAA
AAAAGATCATTTTAAAAACCCTTCCAACAATTAAAGAATATTAATTTATT
CATTCCCACATTGACTCTTTTTTGTTTCTGTTTTCTTGAGACTTTAATAA
GTTCTGTTATTATAACAATCAGATCATATTAACATATGCATTTCAAAGGG
GAAACAAAGACAAGTAGGGCTGTCCTCAAATGTGCTAGCTATTAATTCAT
GTTATTGTGAAATAGCTCATTTATTCCCCTGACT
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTACCATCTGTTTTATATATAATTT
TTATTAATATGTGCAGTTTCTTGCCTGGCAACTAATTATCTTGTTTATTT
TATGAGGATGTATTATAATTCATATTTTCTTTTAGGTAATTATTATTTGT
GAGTTTTCAATCTATTTTAATGCATTCAGCCAAAATATGGACATCACTTC
CTTCAGTCAATTTTTCTAATTTTGTGTTTAATCTTAAAGTTAATAAATAG
AAAAACACAAATAAAAGTTGTTTCACAATTTAAAATATACACAAGTTGTT
TTAATAAAGAACAGATTTCTTGAAGAATACCTACTAATGTGTGCACAAAC
TATGTTTCAATAAACTGAAGGCCCCGCTCTGTTTAAATTAAAATTGGATT
TGACAATAAGTAAGTAAACAAATAAATGATTATGGATATTTTAAATGCTT
GGACATATCAATGATTTTCAATAGAATTATCTTCCAAATACTAAATAATA
GATTGTGTGCAGGGAGAGGAGGATGGGGAAATCAGGTAGAGAGGTAGGAA
TGAATGAGAAAGAAACAGGAAATATTGCAACCCTGGATACTTGGGCTTTT
ATGAATTGTACATTATTAGAAAATAAGAGGGGCTGTCAATGTCATTAATG
CTTTGTGCATTATGAAATACCCTGATCTTTGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_d04.b1 MSMg01no321_d04.b1 CHROMAT_FILE:
MSMg01no321_d04.b1 PHD_FILE: MSMg01no321_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:53 2005
         (308 letters)



>mm_chr8_53433674_53434381
          Length = 708

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcttgtgaacatcacactgaaatggatcttttgctttgatttttcttactgcagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 399 ttgcttgtgaacatcacactgaaatggatcttttgctttgattattcttactgcagcaca 340

                                                                       
Query: 61  aatgaaaatgaagcgatcagctgattattggccatcaacactttgaattatacagcaact 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aatgaaaatgaagccatcagctgattattggccatcaacactttgaattatacagcaact 280

                                                                       
Query: 121 acttccttataataactgtagaaaatattatgatgctttatgagagaaaccaatgctcat 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 279 acttccttataataactgtagaaaatataatgatgctttatgagagaaaccaatgctcat 220

                                                                       
Query: 181 ttatactttctaataaaggataatattataaaacaaaaagtttaagaaataatttatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttatactttctaataaaggataatattataaaacaaaaagtttaagaaataatttatatt 160

                                                                       
Query: 241 agaaatgttcactttctttaacagaaatattgccacaacgtaatgaatttaatagatatg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 159 agaaatgttcactttctttaacagaaatattgccacaacataatgaatttaatagatatg 100

                   
Query: 301 ttcataca 308
           | ||||||
Sbjct: 99  tgcataca 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_d04.g1 MSMg01no321_d04.g1 CHROMAT_FILE:
MSMg01no321_d04.g1 PHD_FILE: MSMg01no321_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:53 2005
         (291 letters)



>mm_chr8_53288946_53289636
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaccatctgttttatatataatttttattaatatgtgcagtttcttgcctggcaacta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 cttaccatctgttttatatataatttttattaatatgtgcagtttcttgtttggcaacta 260

                                                                       
Query: 61  attatcttgtttattttatgaggatgtattataattcatattttcttttaggtaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatcttgtttattttatgaggatgtattataattcatattttcttttaggtaattatt 320

                                                                       
Query: 121 atttgtgagttttcaatctattttaatgcattcagccaaaatatggacatcacttccttc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgagagttttcaatctattttaatgcattcagccaaaatatggacatcacttccttc 380

                                                                       
Query: 181 agtcaatttttctaattttgtgtttaatcttaaagttaataaatagaaaaacacaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcaatttttctaattttgtgtttaatcttaaagttaataaatagaaaaacacaaataa 440

                                                              
Query: 241 aagttgtttcacaatttaaaatatacacaagttgttttaataaagaacaga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagttgtttcacaatttaaaatatacacaagttgttttaataaagaacaga 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)