BAC Information

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BAC

Clone NameMSMg01-321H01
Chromosome8 (Build37)
Map Location 25,469,073 - 25,469,378
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrp1, LOC100040931, Zmat4
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321H01.T7 (MSMg01no321_h01.b1)MSMg01-321H01.TJ (MSMg01no321_h01.g1)
ACCAG440409AG440410
length703750
length of high quality
(start - end)
294 (68 - 361)192 (127 - 318)
definitionCHROMAT_FILE: MSMg01no321_h01.b1 PHD_FILE: MSMg01no321_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:11 2005CHROMAT_FILE: MSMg01no321_h01.g1 PHD_FILE: MSMg01no321_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATAATTTGCGGCGCTATACGACTCCTATATTTCCGATGGGCGGAATTA
GAGTATTTTCCATAATTTGCCTCTTACCAGATAATAAATGCTTAAGAAAC
ATTTCCTGAGTTACACGCCAGATTATATTAACACAGAGCCCGACAATGAA
GACGTCTCTGCTCTACCAGGACACTTAAGTTTCTCAAATGTTTGCTGATA
GTTAATATACAAACGGTTTTCAGTCCTTCTGTTACTGGGCTGGGGTATTG
TAGATACCATGATTCTGCTGGCTTGCCCTTGGGGACCTGGAATTGCTTAC
CTTATCTCTGCCACTGCTGAGGCAAGTGAGCCAGATGTGGACTGCTAGCT
ACCCTAGCTCTCTACTGTTGTTCCCCAGCCAGTCTCCCTTTCCCCATTCC
CGCTTCCTCTGTCCCCCCCGACCCCGACTCTGCTCTCATGGCTGTGCTCC
TGTCTGTCTGCCTGTCACATGTCTACTTATCTGCCTCTAACCTTCTCCGT
CTTCTATTCCTTCCTTCCCCCATATATTCCTCTAGACCATCCCGATCTTG
TCTTTTTAGCCTTCTTAACAGGTATGGCTATTGGATTTTTTTTACTCCCT
ATATTTGCCCTGTTCGTTTAGCCAGTGAGATGCTTTTTTCTGGCCCATTG
ACCCTGGTTGCGGCAATAGTTAGCCACATTTTTAGTTTCCTTTTTGACGC
ACT
CCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGAAAAAATACTTCACAACTAGCCAAGAGCCTATAGC
TGGACAGGTCATATTTTTTACGNANAAAACTACTACTATAGTTTTGCTAA
ATTGCTATAGTGTTCAACCTCCTCTTAAATACTTGTCTAACGAAGAGGAG
GCATGTTCCAGCCCCAGTAAGCAGGAGAACTCGACAGCTTTGACCATGTG
ATTCTGGTTTTACAGTCCAGAATAGAAGGGCCTACTGGGATAATTGATGC
TGGTTATCTGGGACTAATATTTTTTTAGTGATTAAGAAGAGACCAGCATC
ACAGAGGTGTTTTCTTCTTTTCCCCCCCCCCCCCCCCGCTATAATAAGCT
GTTTTACAGAGATAGCCAACCCCCCACAAAAAGAAAAAAATCAGTTGGAT
GTGATACTGTTCACGATTCACCACTCAGGTTGATTTTGAATGCACGACAC
GGACAGTTAGAGCATCTGATGTTTGTTCTTGCGAGAGGTCATGTTAAGAT
TATTGGTGAATTTTTCCGCTCTTGTTGTTGTCGATGTTTTGTTACTGAAT
ATGCTTCGTCAAGGACTTTCAGGCTTTCGCTTCTCTTTTTATTTTCTTTC
GCTTATTTATAGGTCCACTGGCTGTACCCCTATTCTGTTGCTTATTGACC
TCCCGGCGTACTGTAAGATGCTCATTTATCCTTGTCAACGGATCTCCCTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_h01.b1 MSMg01no321_h01.b1 CHROMAT_FILE:
MSMg01no321_h01.b1 PHD_FILE: MSMg01no321_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:11 2005
         (294 letters)



>mm_chr8_25468873_25469578
          Length = 706

 Score =  460 bits (238), Expect = e-134
 Identities = 289/306 (94%), Gaps = 12/306 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctcttac-cagataataaatgcttaagaaacatttcctgagttacacgccagattat 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgcctcttacacagataataaatgcttaagaaacatttcctgagttacacgccagattat 447

                                                                       
Query: 60  attaac-acagagcccgacaatgaagacgtctctgc-tctaccaggacacttaagtttct 117
           |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 446 attaacaacagagcccgacaatgaagatgtctctgcatctaccaggacacttaagtttct 387

                                                                       
Query: 118 caaatgtttgc-tgatagttaatatac-aaacggttttcagtccttctgttactgg-gct 174
           ||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||||  ||
Sbjct: 386 caaatgtttgcatgatagttaatatacaaaacgattttcaggccttctgttactggctct 327

                                                                       
Query: 175 ggggtattg-tag-atac-catgattctgctggcttgcccttggggacctgg-aattgct 230
           ||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 ggggtattgttagcatacacatgattctgctggcttgcccttggggacctggcaattgct 267

                                                                       
Query: 231 taccttatc-tctgccactgctgagg-caagtgagccagatgtggactgctagctaccct 288
           |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 taccttatcacctgccactgctgaggccaagtgagccagatgtggactgctagctaccct 207

                 
Query: 289 agctct 294
           ||||||
Sbjct: 206 agctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 706
Length adjustment: 9
Effective length of query: 285
Effective length of database: 697
Effective search space:   198645
Effective search space used:   198645
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)