BAC Information

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BAC

Clone NameMSMg01-321I18
Chromosome8 (Build37)
Map Location 4,015,678 - 4,016,008
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888
Downstream geneEG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321I18.T7 (MSMg01no321_i18.b1)MSMg01-321I18.TJ (MSMg01no321_i18.g1)
ACCAG440487AG440488
length774750
length of high quality
(start - end)
296 (62 - 357)331 (71 - 401)
definitionCHROMAT_FILE: MSMg01no321_i18.b1 PHD_FILE: MSMg01no321_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:19 2005CHROMAT_FILE: MSMg01no321_i18.g1 PHD_FILE: MSMg01no321_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTACTCTGCTTTCCAGAATGACTACATCAGTTTGCAATCCCATCAAGAGT
GAATGAGGATTCTTTCTCCCATGGGATGGGAATCTCACAGGTGGATCAAC
AGTGTCAACTAACCTGGACCTCTGGGAGCTCTCAGAGATTGAACCACCAA
CCAAAGAAAACACACAGGCTGTAATGAGGACCCCAACACATATTGAGTAG
ATGTGCAGTTCAGTCTTCATATGGATCTTGCAACAACTGTAGCAAAGACT
CTTCCCAAAGCTGTTTTCTGACTGTAGAATCTGTTCCCCAGCAGGGCTGC
CTTTTTTTTTCTCACCCCCCCCCCCACGCTACTACTCTGGCAGACTTCAT
GTACCACCCCCCCCCCTGATACAAAAAACGAAGGCACCCTCTTAGAGGAA
AACGGGAGGGGGTATGGAGGAAGAGTCTCTATGATAGGCTATTGACAGCG
TCTATTATTCGCCCCCTTTTTATTTTCTTTTCCCCATTCATTCTTCCTAC
TATTATTCTTTTCCCTTTTCATTTTTTCCTTCCTTTTCCCTCCTATCCCT
TCTATTTACTTTTTTTTCCCTCTCTCCCTCCATTTTACCTTATTTTTCCT
CTCTTTTTTTTTCTTTACTTCCAATCCCTTTACACAATTATATCTTAAAC
ATATCTCTTTCTATTACATCTTTTATATTCCTCTCTACTTCCCTATCCAC
ATTCTTCCTTCTCTTCTATATTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCTCACCCACCTGTCTTCCTCCACTCAC
CGTCCTCTTTATATGCATCCTTAGTTAGGAAAGAAGTTTGCTGCTCTCAT
TAGGTGGACCTGGGGCTTCCTGCAGCCACTCATTGCTTCAACCTCTTCTC
TGCTGGGTGGATCCTGTTTTTGACTGTGGCTGTGTCTTCCGCTTTCCTCA
TCAAAGCCCTCAGGCCTTTGGATGGTTTGGCTAAAAGTTGTTACAACTCA
AGAGAAGCTCGTATTAGTTGACAGATGCTGTGAGGTTAACTCTGGAATCA
TTCAGGTCCAGGTGCACCTCACAGAGCAGTGTTGGCTGCGTCTGACCACG
TGGAGTCCCCCCCACCTGCTGGAGCCTGCTTAGTCGCATGTGTTGTGTTT
GTCCTACTTCTTGGGATTCTGCTCTGAGTGTTGGAAGTGACAAGCAGCTT
TCTTCTTACTCCCTAGACTTGGACATGCCCCCAGGCTAAGAGATTTGGAC
ATGCCCCCAAGATACTTGGCTTCTTACTGAGAAGAAACAGTTGGTGATCT
CCTGTTACACATCTCTGATAGTGAAAGCCCTTTATCCTCTGTGTCTGGAA
AAGTTCTGGTCCTGCAGTCAGTAGTACAGCTCGAGTTCCCTTGTGTGTCA
CCTATTACGCTGCCTTATTCCACAAGGGTTCCATGCTGCTCACCCATCTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_i18.g1 MSMg01no321_i18.g1 CHROMAT_FILE:
MSMg01no321_i18.g1 PHD_FILE: MSMg01no321_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:19 2005
         (331 letters)



>mm_chr8_4015478_4016208
          Length = 731

 Score =  601 bits (311), Expect = e-176
 Identities = 326/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctcacccacctgtcttcctccactcaccgtcctctttatatgcatccttagttagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tccctcacccacctgtcttcctccactcaccgtcctctttatatgcatccttagttagga 472

                                                                       
Query: 61  aagaagtttgctgctctcattaggtggacctggggcttcctgcagccactcattgcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aagaagtttgctgctctcattaggtggacctggggcttcctgcagccactcattgcttca 412

                                                                       
Query: 121 acctcttctctgctgggtggatcctgtttttgactgtggctgtgtcttccgctttcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acctcttctctgctgggtggatcctgtttttgactgtggctgtgtcttccgctttcctca 352

                                                                       
Query: 181 tcaaagccctcaggcctttggatggtttggctaaaagttgttacaactcaagagaagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tcaaagccctcaggcctttggatggtttggctaaaagttgttacaactcaagagaagctc 292

                                                                       
Query: 241 gtattagttgacagatgctgtgaggttaactctggaatcattcaggtccaggtgcacctc 300
           | |  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 291 ggaggagttgacagatgctgtgaggttaactctggaatcattcaggtccaggtgtacctc 232

                                          
Query: 301 acagagcagtgttggctgcgtctgaccacgt 331
           | |||||||||||||||||||||||||||||
Sbjct: 231 agagagcagtgttggctgcgtctgaccacgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)