BAC Information

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BAC

Clone NameMSMg01-321K03
Chromosome8 (Build37)
Map Location 30,885,018 - 30,885,640
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321K03.T7 (MSMg01no321_k03.b1)MSMg01-321K03.TJ (MSMg01no321_k03.g1)
ACCAG440551AG440552
length737737
length of high quality
(start - end)
668 (44 - 711)667 (71 - 737)
definitionCHROMAT_FILE: MSMg01no321_k03.b1 PHD_FILE: MSMg01no321_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:25 2005CHROMAT_FILE: MSMg01no321_k03.g1 PHD_FILE: MSMg01no321_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTTACATCAGGTACACCTCTGAGCTATCTGATTGAGAGTACTCTTAGAAT
ACTTTCTTAGTCCCTAGCACACATAAAGTTTCTTTATCTCAACTTTGTTA
TTTCTCCTTCAGCCCCAGAAGTGCTTACTCCTATTGTCTTATTCATTTTC
TTGGAGGATTATGTTTAACCACAGAGATATGAAGGGTACATATTCTTCTT
TTCCAAGTGATCATTACATCCAGGTGCCTTCCACAGACAGGTCCAGGAAA
TTTGTATGCATGCACATGAATATATTTTGTATATTTCAACATTTTATATT
GAGTCCTCTTGTTCTCCACAAGAAGAATTATAATTCAGCCCCACAAACTG
CAATGTAACCGCTTTGTCTCTCATTGAAAAGAATCAGAGCACGTTAGTTG
TTGGTTTTATCTTTGCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTATCTC
TCTGTCTCTATCTTTGTCTTTGTCTCTCTGTCTGTCTTCCTGTCTCTGTC
TCTGTCTCTCTCTCTCTCTCTTACACACACACACACATACACACACACAC
ACACACACACACACACACACACACACAGGATGACTAATCCACAGTCTGAA
AATTAAGTTGATTAATGAGAGGATGATAATATTTGTATGCAGCCCTTTTG
CTTTCTGTAGCCTGAAAGAATGTATAATTAAATGATN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAA
TCTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGTTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGAC
ACATGCTCCACTATGTTCATACCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATTCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTACACAATGGATTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTTTTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTAAGGT
AACCCAATCACAAAGGAACTTGCACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAGAAACTTAGGATACCCAAGATATAGGATACAATTTGCTAAA
CACATGAAATTCAAGAAGAATGAAGACCAAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_k03.b1 MSMg01no321_k03.b1 CHROMAT_FILE:
MSMg01no321_k03.b1 PHD_FILE: MSMg01no321_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:25 2005
         (668 letters)



>mm_chr8_30885017_30886083
          Length = 1067

 Score = 1106 bits (572), Expect = 0.0
 Identities = 619/652 (94%), Gaps = 29/652 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaatttacatcaggtacacctctgagctatctgattgagagtactcttagaatactttc 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaatttacatcaggcagacctctgagctatctgattgagagtactcttagaatactttc 565

                                                                       
Query: 64  ttagtccctagcacacataaagtttctttatctcaactttgttatttctccttcagcccc 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagtccctagcaca-ataaagtttctttatctcaactttgttatttctccttcagcccc 506

                                                                       
Query: 124 agaagtgcttactcctattgtcttattcattttcttggaggattatgtttaaccacagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaagtgcttactcctattgtcttattcattttcttggaggattatgtttaaccacagag 446

                                                                       
Query: 184 atatgaagggtacatattcttcttttccaagtgatcattacatccaggtgccttccacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatgaagggtacatattcttcttttccaagtgatcattacatccaggtgccttccacag 386

                                                                       
Query: 244 acaggtccaggaaatttgtatgcatgcacatgaatatattttgtatatttcaacatttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaggtccaggaaatttgtatgcatgcacatgaatatattttgtatatttcaacatttta 326

                                                                       
Query: 304 tattgagtcctcttgttctccacaagaagaattataattcagccccacaaactgcaatgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattgagtcctcttgttctccacaagaagaattataattcagccccacaaactgcaatgt 266

                                                                       
Query: 364 aaccgctttgtctctcattgaaaagaatcagagcacgttagttgttggttttatctttgc 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 aaccgctttgtctctcattgaaaagaatcagagcacattagttgttggttttatctttgc 206

                                                                       
Query: 424 tctctctgtctctgtctctctgtctctctatctctctgtctctatctttgtctttgtctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctctctgtctctgtctctctgtctctctatctctctgtctctatctttgtctttgtctc 146

                                                                       
Query: 484 tctgtctgtcttcctgtctctgtctctgtctctctctctctctcttacacacacacacac 543
           |||||||||||||||||||||||||||||||||||||||||||||              |
Sbjct: 145 tctgtctgtcttcctgtctctgtctctgtctctctctctctctct--------------c 100

                                                                       
Query: 544 atacacacacacacacacacacacacacacacacacacacaggatgactaatccacagtc 603
            |              ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tt--------------acacacacacacacacacacacacaggatgactaatccacagtc 54

                                                               
Query: 604 tgaaaattaagttgattaatgagaggatgataatatttgtatgcagcccttt 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  tgaaaattaagttgattaatgagaggatgataatatttgtatgcagcccttt 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space:   695506
Effective search space used:   695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)