BAC Information

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BAC

Clone NameMSMg01-322A07
Chromosome8 (Build37)
Map Location 14,721,636 - 14,722,321
singlet/doubletsinglet
Overlap geneDlgap2
Upstream gene4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, LOC100041140
Downstream geneC030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322A07.T7 (MSMg01no322_a07.b1)MSMg01-322A07.TJ (MSMg01no322_a07.g1)
ACCAG440830AG440831
length787730
length of high quality
(start - end)
75 (46 - 120)652 (77 - 728)
definitionCHROMAT_FILE: MSMg01no322_a07.b1 PHD_FILE: MSMg01no322_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:53 2005CHROMAT_FILE: MSMg01no322_a07.g1 PHD_FILE: MSMg01no322_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTGCCAGCTATTTGAAAGAGAGAAGGAGTGGGGGTGGGGTGGT
ATATGTGAGAGGAAGGCACTCCCCCCGTCTTGTTTTGCTTGTTCCCCCCC
CTTCCTGTGCTTCGCATGTTGATAATACTTTGATTATGGCCTTCTTGACC
CTTGTTTTATTCCCCGCCCCACCCCGCTCCCCTCTCTTGCCGTACCCCGC
CCCACCCCCCGGTTGGCTCTCGTTGTCCCTTTGACAGCCCTGGTGAAATC
CCCCATCCAACTCCTTTTTTTTTTCTACGAGCTTTTCCTCACCCTATTCC
ACACCCACTTTTCGTGACTCCCTGACTTTTTTCCGTTTGACCATTCATTT
TTCATTTTTTTTTTTCACCACAACCCTTTCAAAGAGATTTTTTTGCATTT
TTTCCCCCTTTGCTTTTCCTGTCCCCCCTCCTTTTTATACCCCCTTTCAT
TTCTTTTTCCCCCACTTTTTTTGTTCTTCTTCTCATTTGCCTCCCCTACT
CTTTGTCTTTTTCCCCCTTCTTTGACCCCCTTTTTTTACCATTTTTCCCC
CCTTCCGCTTCCTTTCGGTTTCTTTCCACCCCTATTTTCTTTCCCTTTTC
TTCTCCTTTTTTTTTTTCCTTTTTTTTCCTCCCCCTCTCCTTGTTATTTC
CTCTTCCCTTTTTTATCCCTTTTCATTTCTGCCCCCCTTACACTCCCCTT
TTTCTCCTTTTCCCTCTTTCCCCCTTTTTCTTTTTTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGCCTGACTTATGCATTCCCA
AATTAGGTGCCCTCTCCCTAGTAGGTTCCCCTGTTGAAACACTTTCCGGT
CCAGTGAGATGGCTCAGCGGGCAAAAGCACCTTCCCTAGAAGTGTGAGTT
CCCTGGGGCCATGGTGGAAGGAGAGAACCAACTCCTGCAAGTTGTCCTCT
GGCCTCCACACACAGGCATTTGGCCTGCATGTGTGACTTGCACCATGTGT
GTACTGCCTGCAGAGGGCGGTCAGATCCATAGAGGGGCTGGTAATGGAAC
CCAGAACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCT
CTAGTCATACTGTGGCTCACGCGCACCTGCACACACACACACACACACAC
ACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGGTAGAC
AGACAGACAGACAGACAGACAGACAGAGACTAAGAAACAGAGAGAGAAAA
CAAGAAAGACAACAGTAATAAAATGAAAAAATTAGACATTAATAACCAAA
ACAAAAATAAGATTACTGCATAAATACCCACTGACACCCCCTCCCTAGTA
ATCTCTCAGTTTAGTGAGAGACTATGTGACTTCTGCAAAGGTCCTGTGTG
TTTCCTAACGGAAAGTCAGCAGCATCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_a07.g1 MSMg01no322_a07.g1 CHROMAT_FILE:
MSMg01no322_a07.g1 PHD_FILE: MSMg01no322_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:53 2005
         (652 letters)



>mm_chr8_14721470_14722521
          Length = 1052

 Score =  959 bits (496), Expect = 0.0
 Identities = 621/702 (88%), Gaps = 66/702 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggcctgacttatgcattcccaaattaggtgccctctccctagtaggttcccctgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 acaggcctgacttatgcattcccaaattaggtgccctctccctagtaggttcccctgttg 226

                                                                       
Query: 61  aaacactttccggtccagtgagatggctcagcgggcaaaagcaccttccctagaagtgtg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 227 aaacactttccagtccagtgagatggctcagcgggcaaaagcaccttccttagaagtgtg 286

                                                                       
Query: 121 agttccctggggccatggtggaaggagagaaccaactcctgcaagttgtcctctggcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agttccctggggccatggtggaaggagagaaccaactcctgcaagttgtcctctggcctc 346

                                                                       
Query: 181 cacacac------------------aggcatttggcctgcatgtgtgacttgcaccatgt 222
           |||||||                  |||||||||||||||||||||||||||||||| ||
Sbjct: 347 cacacacttgctgtggcatatgtacaggcatttggcctgcatgtgtgacttgcaccacgt 406

                                                                       
Query: 223 gtgtactgcctgcagagggcggtcagatccatagaggggctggtaatggaacccagaacc 282
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtgtactgcctgcagagggcagtcagatccatagaggggctggtaatggaacccagaacc 466

                                                                       
Query: 283 tctggaagagcagccagtgctcttaaccactgagccatctctctagtcatactgtggctc 342
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 467 tctggaagagcagccagtgctcttaaccactgaaccatctctctagtcatactgtggctc 526

                                                                       
Query: 343 acgcgcacctgcacacacacacacacacacacacacacacacacacacacacacaca--g 400
           | | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 527 atgtgcacctgcacacacacacacacacacacacacacacacacacacacacacacactg 586

                                                                       
Query: 401 agagagagagagagagaggtagacagacagacagacagacagacagacagagactaagaa 460
           ||||||            |||||||||||||||||||||||||||||    |||||||| 
Sbjct: 587 agagag------------gtagacagacagacagacagacagacaga----gactaagag 630

                                                                       
Query: 461 acagagagagaaaacaagaaagacaacagtaat----aaaatgaaa------------aa 504
           |||||||||||||||||||||||||| ||||||    |||||||||            ||
Sbjct: 631 acagagagagaaaacaagaaagacaatagtaattaataaaatgaaagagtgaggctacaa 690

                                                                       
Query: 505 --------------attagacattaataaccaaaacaaaaataagattactgcataaata 550
                         |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 691 gcagtcataatgttattagacattaataacaaaaacaaaaataatattactgcataaata 750

                                                                       
Query: 551 cccactgacaccccctccctagtaatctctcagtttagtgagagactatgtgacttctgc 610
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 751 cccactgataccccctccctagtaatctctcagtttagtgagagactatgtgacttctac 810

                                                     
Query: 611 aaaggtcctgtgtgtttcctaacggaaagtcagcagcatcca 652
           ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 811 aaaggtcctgtgtgtttcctagcagaaagtcagcagcatcca 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)