BAC Information

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BAC

Clone NameMSMg01-322D19
Chromosome8 (Build37)
Map Location 73,307,292 - 73,307,639
singlet/doubletsinglet
Overlap geneMast3
Upstream geneAtp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971
Downstream geneIl12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322D19.T7 (MSMg01no322_d19.b1)MSMg01-322D19.TJ (MSMg01no322_d19.g1)
ACCAG440988AG440989
length728732
length of high quality
(start - end)		348 (322 - 669)233 (127 - 359)
definitionCHROMAT_FILE: MSMg01no322_d19.b1 PHD_FILE: MSMg01no322_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:09 2005CHROMAT_FILE: MSMg01no322_d19.g1 PHD_FILE: MSMg01no322_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAACCGCGGAA
TTCCTGCTGTTACACAGAGCTTTGGGGACACAGTAGGGACCACCAGAGTT
TAGATCTGCTGTGCAGGACCCTGTTCCCAGATGCCTGGCAGGCTCCAGCT
CAGGTTCCCATGCTGGCTGGGCCATTCTCCTGTAACTGAGCAGGACAGCC
CTGGACCTCTGGGTGTCCCTGGCTGCCCCAGCCTCCCCTTCCCTCCCACA
GCTCGCTCTGAGCGGTACCGCCACTTGGGCTCCGAGGACGACGAGACGAA
TGATGAGGAGTCCTCCTTCGGAGATCCCCCAGTTCTCCTCCTGTTCCCAC
CGCTTCAGCAAGGTAGGCTGGCCGGTGGCAATTTTCCTGAGTCCGTCTGC
CTGTGCGGGGTGACCTCTGTCACCGTTCCCTCATTACTGACATTAAGAGA
GAACACCTCCCAGGTTTACAGCAGCTCTGAGTTCCTGGCCGTCCAGCCCA
CCCCAACCTTTGCTGAAAGGAGCTTCAGTGAGGACCGAGAAGACGGCTGG
GGGCAAAGCCTCGGGGACCGTGGCCGCCGGCTGAGCGCTGACCTCCGGTA
GGTGGGCTGAGGAGTTGAGAACCAGATCACAGAATCTGAGGTAGATGGAG
CCTCCCAGTGGCCCAGTAGGAAAGAGTGAAGGCAGGAGGTCCCTGCTGGT
CTCACTCCTATGGCTTCATATTCCTAAA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCAGCCTGGTCTATATGGCGA
GTTCCAGGACAGCAGCCTTTACCTCGTGAGACCCTGTCTCAAAGTCGGAG
TAAAAACGGTGTCTCCTGTAGCCCAGGCTGACCTCCAGCTCTCTACTTCA
CTAAGGCTCCTTGAACAGGTGGTCCTCCTGCCTCCACCTCTGGGTGCACG
CTGGGAATGAGAGCATGCTTCTTTCCCCCACTCCAGCGCAGACGCACGTG
TATAACACGCGGCCCCGTGTTATTACGAGGGGTCGTGGCGCATGGGCGTC
GGGAAGCATCTCTTTTTAAGGCTTGCTATCGCTGCAAGTGTCCCCGGTTG
GACACGACGGGTTTAGCGCCCACTTGCTGGAGATTGCGCACAGGTGGGTC
GTCAGCACCCGGTGGCGCAGTCATGAGCTCAGGTTTCCTGTGTGAGTGTG
ACAGCATGCAGGTCACCACGGCGCTAAGTCTCGCGTGGTGTCCCTGGTGC
AGGCAGATCCCCTAGCCCGGGCCTCCCCGCCCCCACCCTAGTGGGCGGGC
GGGAAGCCGAGCCGCCGTGGTTCCAGGCGCTCAGGAAAGGCTGCCGGGGC
GCGCCCCGCCTCCTCCCCCAGGGNTCAGCTGGGCCGACGCCGGCCTTTCC
CATTTCCTGCTTGGCCCGCCACCCCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_d19.b1 MSMg01no322_d19.b1 CHROMAT_FILE:
MSMg01no322_d19.b1 PHD_FILE: MSMg01no322_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:09 2005
         (348 letters)



>mm_chr8_73307092_73307839
          Length = 748

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatcccccagttctcctcctgttcccaccgcttcagcaaggtaggctggccggtggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agatcccccagttctcctcctgttcccaccgcttcagcaaggtaggctggccggtggcaa 489

                                                                       
Query: 61  ttttcctgagtccgtctgcctgtgcggggtgacctctgtcaccgttccctcattactgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttttcctgagtccgtctgcctgtgcggggtgacctctgtcaccgttccctcattactgac 429

                                                                       
Query: 121 attaagagagaacacctcccaggtttacagcagctctgagttcctggccgtccagcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attaagagagaacacctcccaggtttacagcagctctgagttcctggccgtccagcccac 369

                                                                       
Query: 181 cccaacctttgctgaaaggagcttcagtgaggaccgagaagacggctgggggcaaagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cccaacctttgctgaaaggagcttcagtgaggaccgagaagacggctgggggcaaagcct 309

                                                                       
Query: 241 cggggaccgtggccgccggctgagcgctgacctccggtaggtgggctgaggagttgagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cggggaccgtggccgccggctgagcgctgacctccggtaggtgggctgaggagttgagaa 249

                                                           
Query: 301 ccagatcacagaatctgaggtagatggagcctcccagtggcccagtag 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccagatcacagaatctgaggtagatggagcctcccagtggcccagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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