BAC Information

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BAC

Clone NameMSMg01-323A12
Chromosome8 (Build37)
Map Location 73,890,959 - 73,891,549
singlet/doubletsinglet
Overlap gene2010315L10Rik
Upstream geneComp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b
Downstream geneOcel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323A12.T7 (MSMg01no323_a12.b1)MSMg01-323A12.TJ (MSMg01no323_a12.g1)
ACCAG441568AG441569
length1,1571,268
length of high quality
(start - end)		---591 (135 - 725)
definitionCHROMAT_FILE: MSMg01no323_a12.b1 PHD_FILE: MSMg01no323_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:08 2005CHROMAT_FILE: MSMg01no323_a12.g1 PHD_FILE: MSMg01no323_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGTGAGGNNNNNCCCATTCGCGCTATAGACTCACTAAGGGAGAGGATC
CGCGGAATTCCTGGGAAANNNNAATCGATTTACCCCCCCCNANNNNANNN
NATNAGNANNGAAGCGTAAAGAGACCCCCGNNNGNNAANNNGNGNNNNAN
NNNGGAGGGAAAANNNNNANNNNNGNNNNNNANNNNNANNNNGGGNNNGA
ANNNNAAAGNNGNGNNNNANNGGGGGGNNGAAGGNNGGAGGNGGGGNNNN
NGGGAAGNAAGNGGNGNNGNGNGNNNNNGGNGNGNGGNANNGNNNNNNGG
GNNNNGAANNNNNANNNNNNNNNNNANNNNNNNNNNNNNNNNNNNAAGNN
NNNNNNNGNNNNNNNNNNNNNNNANNNNNNNNNNANNNNNNNNGNNATTT
TTTGGANAAGGNNGNGANNNNNNNANNGANGAAAGGGAAAANNGGGNNNN
ANAAGGGAGCCCANNGAGAAGNAGNNGNNAGGGAAGAGAGAAAAGAGNNG
NAGAGGGANGNNNNAAGNGGGNNNANNGGNAGGNGGGGAANAGGAANANN
NNNNNAGGGNNNNNNNAAANANGGGNNGNNNNGGAAANGAGGGAGGNNNG
AAGNAGNAGGGGGNNNAGGAAGNAANGNNGGNNANAGNNNNGAGGNNGGA
GGGGGAANNNNGNNNAGGNNGGNNGGAGGGGNNGGNNNNAGNAANNNNNN
AGGNAAANNNNAAAANGNAAGGNAAANNAAAANNGNAANNNNGNNNNAAN
GNNANNNAGAANAGGGNNAAGAGNNNNNGGNNNNGGNNAANNGAGNGNAG
GGAANNAAAGGNAAANAAAAGGNNAAAAGNNNAGGGAAAAAAANNAAGGG
AAAAAAAANGAAAAAAAAAGNGAAAAAAGGGGGAAAAGGANAAGGAGAAN
NNGAAAAAGAAGGGGGGGGAAAAAAAAGGGAAANGNGNAGAANGAGAGGA
AAGGGAAGGGGGAAAAAAAAAAAGAAAAGGAAAAGAGGAAAAAAAGAAAG
GAAGGGGGAAAAAAANAANGNAAGGGAAAGGAAAAGNNNNNNNNAGGGGA
GGGGGGGGGANANNGGGGAAAANAANAGAGGAAAAGGGGGAAGGAAAAAA
AAAAAAAANGGAGGGGAGAGGGGGGAGAAAAAAAGAAGGNNAGAGGGGGG
GAGAAGG

NCCGGCCTTNNNNNGCTGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAAAGGACCTAATCGGCTGT
TCAGGGCCTACATGGACTCCTTAAACTCTGCCCCAAAAAACGAAAAAGGC
CAGGTATCAAGACCATCATTTTAAAAAGAGACAGGGACGAAAACGATTTA
TCTTTGAATAAACTGCGGCTTGAAATAAAACTCTACTTCCGTCCCAAGCG
TAGCAGGGCGGACCTCGGAGGGGAAGGACCTCACTCAGGCACTTCCGCCC
TTTTCTAAGATGGCGCAGGCGGAAGGAGCCTATCATCGCCCGCTGGCGAC
GTCGCGGTTGGAGTTGAACCTGGTACGGCTGCTTTGTCGCTGTGAGTCGA
TGGCGGCAGAATTTTGAGAACCGGACGAGTGGCGACTGGAGAAGGTGAGG
GATTCCCACGCCGCCGCAAAGGCCTGCGAACCAACTCCACAGGCCACTGT
CTCCGCTCCTTCTGGTCCGCGGCGACACGCCCCTCGTGCGTAACCCCTGA
CGTCCTAGTTTTCTCCCTACAGCTTCACGCACAGGCCACGCCCTCTCAAT
TCTAGGTCTTCGCTTATGTCCCCTCCCCTCTCTGACTCCTCTCCGGGTCC
CACCCCTCTCCCTGGTTTGCTCCTGCCTTGGGCCACTGGCTTGGCTGACA
CCATACCTTCCCTCCCAGTATGTGGGTGCCCTGGAAGACATGCTGCAGGC
CCTGAAAGTTCAAGCAAGGTGAGTGTGGGGGCACCGAGTCACCACCTCCT
ACGACGGCACAGCAGCAGACTAACTTTTTCCTGCTGCCTTTCAGAAAACC
CGGCTCAGAAGGGATCAGCGAGTACTCCCGCAAAGGGGACTTTCTGGAAG
GCATGCTGCCGGCCGAAAAGTTGGGGAAGCTGGCCTCCCATCCTCAAGAG
GGGCCTCACTCAGTTCCCCAAGCCCCCTAGAACCAGGGCACAGCCCCCAA
AAAACTCGGCTCCCCCTTTCAAGGTCCCCTCAAACCTCCCCCTCCGGAAA
AAAGCTCTAATTAAACAATTTTCTGGGTTCCGGGGCGGGGGTCCCTCCCA
AGCCCAAGGGCGGGGGGGCCTTGGCACCAAAATTGGTCCATTTGGCTGCC
TAGGGCGGCGCTTATCCCCAATGAAACATCCCAAGTAAACCTTTTGGTTA
CCTGAAAAATAACCCCCCTCCCTGTCCGTGGGGACCAACACCCTGGTGGA
TATTAAGAAAGAACGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_a12.g1 MSMg01no323_a12.g1 CHROMAT_FILE:
MSMg01no323_a12.g1 PHD_FILE: MSMg01no323_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:08 2005
         (591 letters)



>mm_chr8_73890759_73891749
          Length = 991

 Score = 1112 bits (575), Expect = 0.0
 Identities = 587/595 (98%), Gaps = 8/595 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaacgaaaaaggccaggtatcaagaccatcattttaaaaagagacagggacgaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaacgaaaaaggccaggtatcaagaccatcattttaaaaagagacagggacgaaaac 260

                                                                       
Query: 61  gatttatctttgaataaactgcggcttgaaataaaactctacttccgtcccaagcgtagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttatctttgaataaactgcggcttgaaataaaactctacttccgtcccaagcgtagc 320

                                                                       
Query: 121 agggcggacctcggaggggaaggacctcactcaggcacttccgcccttttctaagatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcggacctcggaggggaaggacctcactcaggcacttccgcccttttctaagatggc 380

                                                                       
Query: 181 gcaggcggaaggagcctatcatcgcccgctggcgacgtcgcggttggagttgaacctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggcggaaggagcctatcatcgcccgctggcgacgtcgcggttggagttgaacctggt 440

                                                                       
Query: 241 acggctgctttgtcgctgtgagtcgatggcggcagaatttt----gagaaccggacgagt 296
           |||||||||||||||||||||||||||||||||||||        |||||||||||||||
Sbjct: 441 acggctgctttgtcgctgtgagtcgatggcggcagaa----aaacgagaaccggacgagt 496

                                                                       
Query: 297 ggcgactggagaaggtgagggattcccacgccgccgcaaaggcctgcgaaccaactccac 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggcgactggagaaggtgagggattcccacgccgccgcaaaggcctgcgaaccaactccac 556

                                                                       
Query: 357 aggccactgtctccgctccttctggtccgcggcgacacgcccctcgtgcgtaacccctga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggccactgtctccgctccttctggtccgcggcgacacgcccctcgtgcgtaacccctga 616

                                                                       
Query: 417 cgtcctagttttctccctacagcttcacgcacaggccacgccctctcaattctaggtctt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cgtcctagttttctccctacagcttcacgcacaggccacgccctctcaattctaggtctt 676

                                                                       
Query: 477 cgcttatgtcccctcccctctctgactcctctccgggtcccacccctctccctggtttgc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cgcttatgtcccctcccctctctgactcctctccgggtcccacccctctccctggtttgc 736

                                                                  
Query: 537 tcctgccttgggccactggcttggctgacaccataccttccctcccagtatgtgg 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcctgccttgggccactggcttggctgacaccataccttccctcccagtatgtgg 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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