BAC Information

Click to search

BAC

Clone NameMSMg01-323I07
Chromosome8 (Build37)
Map Location 105,019,963 - 105,020,644
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323I07.T7 (MSMg01no323_i07.b1)MSMg01-323I07.TJ (MSMg01no323_i07.g1)
ACCAG441918AG441919
length1,2301,180
length of high quality
(start - end)		682 (129 - 810)735 (131 - 865)
definitionCHROMAT_FILE: MSMg01no323_i07.b1 PHD_FILE: MSMg01no323_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:09 2005CHROMAT_FILE: MSMg01no323_i07.g1 PHD_FILE: MSMg01no323_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCAATAAATTNNNNNCCATTGCGCGCTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCACTAATGCTAGTGGACCTTTAAGTATGAAGCATTGAGAA
GAAAAGATTTATTTTGCCTAATGGCTTAAAAACATCCAACCAAGGCTGCT
TAGTTTCATGCCTATGAGCAACACTTGATAACAATGAGCACAAGTCTCAA
AGGAATTAACCTTTCCTTGGGCCACCAATAAAGTTTGCTTCACGACTGGT
CATGAAGCACAAAGAATCATAGGAAGGAGCCAAAGATAATAAATCCTCAA
TGACTTGGGCCCTAGTGCTCTACTTCCAGCAGCTGGGCTCCATCACCCTG
CCTCTCCATTTCACCATATAGATCTACCCTCCTGGAAATAATCATGCAAA
ACATAAATTCATAACCCAGAGTTCACTTGCATTCTTGTATGTAACTTATT
TATCAAAAGTTAAATTTAAAATATCAAGGATGTTTATTCTGCATACATGG
TTTTGTTGTATATATTTGATATACAGAACAATTCAGACAATTGGTTTTTC
TAATATACATAATCCATATGCTAATCTTTGACACTAGTATACATATATAT
GTATACAGATTTATATTTACATACATACACTGATCAACATATAAACATAG
CACTAATCTTGTAGCATACATATATATGTATACATATTTATATTTACATA
CATACACTGATCAACATATAAACATAGAGCTAACCTTGTAGCTAGAACAT
CTCTGCTATAAATAATATTTATATCTGCAACCTCAAAAGCAGATTAAAAA
ACAGGATTTACCAAAGAGCTACATATGATTATAAACTCATAAGCAACTGC
TCAGCCTTACTACTCATTAATGAAATCAGATACCACTCTAATTATCAAGG
ATCACAGAATAAATAACATCCCCTCTTGGCAGCAGTACAGGGAAAGGACT
TTATCCTACATTAACCGNAAGAAGGGAAAAAGGTTTCAGCTTCCCTCCCC
CTGCAAATTTGGAACACAAATTCAAGGGGGGGAAGTTTACCCTTACTCTT
TGGGCCCCAAAAAAACAACATCCTGAAAATAAATTTTATATGAAAAAAAA
TAAAACATGGTTTTTTATGAAAAAACTTCCCTCAAATGGAAAAAATTCAA
AGTTAATGTAAAAATGAACTGGGGCCCTCCTGAAAACAATAACCCGAAAA
TTAGGGTAAAACCAAAGGGGAGTCCGATTG

NCCATTCTTTNTNNNCAGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGACTTTCTGNGATTTC
ACACATTCAAAGTTTTCTAACATAGATCCTGTTCCCAATCCAGCCCTTCT
ACTGAGGCTAAGGACATGAGCATCTTTCCCTCCATCTACCTTCCCATTGT
CTCCTTTTGGGTCTGCTGAGTTCAGAAGGCCATCTGAATGTTTTCCCAAA
TAAATAGTTGTCTAACTAACTAACTAACTAACTAACTAACTAACTAACTA
ACTAACTAACTAACTAAGGACAGCAGTCTTATTTCATTAGTTCTCTAACT
CAGAGGATTGCTATCACCAGAAAGTCTTTGATCACCCTCCTCTATCAAAA
GGTTTATGGTCTTCTGATTATTCTTCCCTGACTACTCCTGGCTACTTAGC
TTGTAAAAGTATGGCTGCTCTCAACTGTGACTTCAGTATGAAATATACAC
TGAGCCTAAAACAGAACATTAAAACAAAGTAGAAGTAAAATAAGATAGTT
TATATACTGGGTAAATGCTGTAATTATCTGATGGGGATATGACTATGTGA
TAAAATATGTGGTTAAAATTAATGGACTTTTTATAACTTTTAAAAATGTG
TCTTTCTGAATATTTACCATTCTCCAGATTTCAATGAATTCTATGTTAGT
GAGTCCTAATGAAGTTCTATATGACCAGGCCTACTAGCTGACCTTAGACC
ATTACCAAGGGTTGAAATCTACAATCCAGGAATGGCTGCCTCAGCACTGA
CCCACAGACAGACGCTTGCATACAGAGAGGCATTTAATGATATATTTCTG
TCCTTTTATTTTAGAGGAGAATTTTGATCCTAAGGAAAAATACTTTGTCT
AAGTTGCACAGTTATGTACTAACAGAACTTATGCTTTAGCATACACCTCT
TCCCTTATGGGCTAAAAACTTTTGCCCCCAGGGCTTTGGAAATTCCAAAA
TTTTTAAAAAAAATGGGTTTTTTAAAATCCCCCTAAGGACTTTTCCACGG
ACAAAATTTCCAGTTGGGCCAAAAAAAAAAGCCCACTTTTTTTCTTTAAA
AAAAAAAATTCTCCAAATCCTGTTGTGGGGGAAAAAAAATCCAAGCTAAC
TTTCCCTGGAGAAACTGTTCTCTTTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_i07.b1 MSMg01no323_i07.b1 CHROMAT_FILE:
MSMg01no323_i07.b1 PHD_FILE: MSMg01no323_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:09 2005
         (682 letters)



>mm_chr8_105019763_105020844
          Length = 1082

 Score = 1280 bits (662), Expect = 0.0
 Identities = 677/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacatccaaccaaggctgcttagtttcatgcctatgagcaacacttgataacaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacatccaaccaaggctgcttagtttcatgcctatgagcaacacttgataacaatgag 260

                                                                       
Query: 61  cacaagtctcaaaggaattaacctttccttgggccaccaataaagtttgcttcacgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaagtctcaaaggaattaacctttccttgggccaccaataaagtttgcttcacgactg 320

                                                                       
Query: 121 gtcatgaagcacaaagaatcataggaaggagccaaagataataaatcctcaatgacttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcatgaagcacaaagaatcataggaaggagccaaagataataaatcctcaatgacttgg 380

                                                                       
Query: 181 gccctagtgctctacttccagcagctgggctccatcaccctgcctctccatttcaccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctagtgctctacttccagcagctgggctccatcaccctgcctctccatttcaccata 440

                                                                       
Query: 241 tagatctaccctcctggaaataatcatgcaaaacataaattcataacccagagttcactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagatctaccctcctggaaataatcatgcaaaacataaattcataacccagagttcactt 500

                                                                       
Query: 301 gcattcttgtatgtaacttatttatcaaaagttaaatttaaaatatcaaggatgtttatt 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 gcattcttgtatgtaacttatttagcaaaagttaaatttaaaatatcaaggatgtttatt 560

                                                                       
Query: 361 ctgcatacatggttttgttgtatatatttgatatacagaacaattcagacaattggtttt 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtatacatggttttgttgtatatatttgatatacagaacaattcagacaattggtttt 620

                                                                       
Query: 421 tctaatatacataatccatatgctaatctttgacactagtatacatatatatgtatacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctaatatacataatccatatgctaatctttgacactagtatacatatatatgtatacag 680

                                                                       
Query: 481 atttatatttacatacatacactgatcaacatataaacatagcactaatcttgtagcata 540
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 681 atttatatttacatacatacactgatcaacatataaacatagcgctaaccttgtagcata 740

                                                                       
Query: 541 catatatatgtatacatatttatatttacatacatacactgatcaacatataaacataga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catatatatgtatacatatttatatttacatacatacactgatcaacatataaacataga 800

                                                                       
Query: 601 gctaaccttgtagctagaacatctctgctataaataatatttatatctgcaacctcaaaa 660
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctaaccttgtagctagaacagctctgctataaataatatttatatctgcaacctcaaaa 860

                                 
Query: 661 gcagattaaaaaacaggattta 682
           ||||||||||||||||||||||
Sbjct: 861 gcagattaaaaaacaggattta 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |