BAC Information

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BAC

Clone NameMSMg01-323L03
Chromosome8 (Build37)
Map Location 100,580,459 - 100,581,116
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC333331, LOC546090, LOC636859, EG384885
Downstream geneLOC100041173, EG636915, Cdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323L03.T7 (MSMg01no323_l03.b1)MSMg01-323L03.TJ (MSMg01no323_l03.g1)
ACCAG442045AG442046
length1,2311,243
length of high quality
(start - end)
658 (90 - 747)623 (136 - 758)
definitionCHROMAT_FILE: MSMg01no323_l03.b1 PHD_FILE: MSMg01no323_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:32 2005CHROMAT_FILE: MSMg01no323_l03.g1 PHD_FILE: MSMg01no323_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCATTCNNNNNNNATCATTGGGCGCTAAGACTCCTATGGGAGAGGATC
CGCGGAATTCCACTGTGGAGAACAGATTCTTTAATATTGTAAAGGCTTTG
AGCATGAACTATGACAGCCTAGATCTCTGGAGGGATAATATTCTGGAGTT
AAGCACATAGAAACAAGTATTCTGTGTCAATGTTGATTTCTATGGCAAAA
ATTCTTAGACTGAGTCACTTGTAAATAATCGAAATTTGCTAATGCTGCTA
CTAGAATTTAGATAATTCACCAATGAGGAGGTAATAGACTTGATATGTAG
TGTGGCTCATTCCTAGAATTGGGATAATTCTAGAAGGTGTTTTTTCTGTG
CCCTAACAAGGTAGGATTCTGTAAACATCCTGACATGCCTCTTGTAAAAT
TCCTATTCCTATTCAAAAGAACCCTTGACTTATAATGGAACAGTCCCCAC
CCCCACCCCCCAAAAAGGGCTGCTAATACTGCACTGGCGTAATAATTGCG
CTGGTGTCAGAATTTCATTATATGAACTTAGGACAGAAAGAAAGATTATA
GCCTAGTGTGACTATAGGAAAACATCCATCATAAGTAGCAAAGACAGGAC
GTTGGGGATTCTTCTCGACAAGGAATGTGCCAGCTCAATTCAGCACCATT
TGGTATCCTCATAGGTCTTTGCTTATTCTATTATATTAAATGTTAATTTT
TCTCTCTTGTTCTTTCTTAAAAGTTTAATTTGAATGTATGAATAAGACCC
CGCNCCATTTTGATTTATCCCCGACCCAATAAATTGAAGAACCTACTCAC
TGAGTAATATAGAACGATATGTGTGTATGCTACTATAGCAACGTTAATTA
TATATATATATACACATATATATATATATATATATACATATATATATATA
ATTTACCCTACTCATACANAATACCACATTATCGTTTCATATACCACAGT
GAGTAGTCTCTTCCATTTTTTCATTCAAAAAAACATCCCCTTTTTGGTAG
GTTTTTTTCTTCCTTCCAATTACATTTCAAAAAAGACCAGAGAGAAAAAT
TTTCTTTTTTATATAAAAAAACCCATACCTTTTTATAATCCCACGGGTCG
TATTTTTCTGTCTATTTTCTTTTGAAAAAAAAACCAGACACTCTCTTTTC
TCATTATGAGGATTTTTCTAAAATACAAACATAAAACTTTTTTCTCTTCT
TCCCTTTTTTATAAATTCTCTACCGCTTCTT
NCCCAGTCTNNNNNNGATGATGGAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGTCCCCGCTGGGGAAC
GAGAGNACCAGGGAGTACCGTTAAACGAGCCCCCTCTGGTCTTGAACTTT
CTAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAATATGTTTGGC
CTTGAATTTTTTCTGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTA
TCAAGTGATTAAGATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAAGC
TATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAACAAAGAGGAAGTATACA
GGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGAA
TACCTGGAGTTTTTTTAGAAGAAAAAGAGGAAAAAGGGAAAAGAAGAAAG
ATCAATTAGCGGAGGTCTCTAGGAAAAGGAGCCTGTGCTCATCGCTGGAT
GGGCTCGGGGAGCCAGCTCTTAGTAGCTCTGAAGCAGGTGAAGAATCCTC
CTCTGAGGAAACAGACTGGGAGGAAGAAGCAGCTCATTATGAGAAAAAAG
GGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAAAGCG
GCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTCAAGG
TCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAG
AGAGGCAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATA
CAACAGGCATTTCCGGTCTTTGAAGGACCCGAGGGTGGGCGTGTCCACGC
TCCGGTAGAAAATTTACAAATTAAAGAAATTGCCGAGTCCGTTCGTAAAT
ACGGAATCAATGCTAATTTTACCTTGGTGGAGTTAGACAGGCTCGCCGGC
ATGCCACTAACTCCTGCCGACTGGCAAAGGTTGTAAAAACCGCTCTCCCT
AGTATGGGCAAAAATATGGAATGGAAAGCGTTCTGGACCGAATTTGCCCA
AGCCAAGCCCCAACAAACCCATTGTTTTTACTCCGAAACAAAAGATGGAA
TTTTTACCGTTTACGGTCAGGGAATTTTTCTGTTGAAAAAAAATTTCCTT
GGAGACTTTTCCCAAATTCTTCCCAGCATTATAGCCTGAAAGGCTCTTCC
ACCAGGGAAACTCTGGGTGTATCAACAAAATCCCCGGCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_l03.b1 MSMg01no323_l03.b1 CHROMAT_FILE:
MSMg01no323_l03.b1 PHD_FILE: MSMg01no323_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:32 2005
         (658 letters)



>mm_chr8_100580259_100581316
          Length = 1058

 Score = 1210 bits (626), Expect = 0.0
 Identities = 650/658 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaggctttgagcatgaactatgacagcctagatctctggagggataatattctggagt 60
           ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||
Sbjct: 858 taaaggctttgagcatgaactatgacagtatagatctatggagggataatattctggagt 799

                                                                       
Query: 61  taagcacatagaaacaagtattctgtgtcaatgttgatttctatggcaaaaattcttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 taagcacatagaaacaagtattctgtgtcaatgttgatttctatggcaaaaattcttaga 739

                                                                       
Query: 121 ctgagtcacttgtaaataatcgaaatttgctaatgctgctactagaatttagataattca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 738 ctgagtcacttgtaaataatcgaaatatgctaatgctgctactagaatttagataattca 679

                                                                       
Query: 181 ccaatgaggaggtaatagacttgatatgtagtgtggctcattcctagaattgggataatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccaatgaggaggtaatagacttgatatgtagtgtggctcattcctagaattgggataatt 619

                                                                       
Query: 241 ctagaaggtgttttttctgtgccctaacaaggtaggattctgtaaacatcctgacatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctagaaggtgttttttctgtgccctaacaaggtaggattctgtaaacatcctgacatgcc 559

                                                                       
Query: 301 tcttgtaaaattcctattcctattcaaaagaacccttgacttataatggaacagtcccca 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttttgtaaaattcctattcctattcaaaagaacccttgacttataatggaacagtcccca 499

                                                                       
Query: 361 cccccaccccccaaaaagggctgctaatactgcactggcgtaataattgcgctggtgtca 420
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 498 cccccaccccccaaaaagggctgttaatactgcactgacgtaataattgcgctggtgtca 439

                                                                       
Query: 421 gaatttcattatatgaacttaggacagaaagaaagattatagcctagtgtgactatagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaatttcattatatgaacttaggacagaaagaaagattatagcctagtgtgactatagga 379

                                                                       
Query: 481 aaacatccatcataagtagcaaagacaggacgttggggattcttctcgacaaggaatgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaacatccatcataagtagcaaagacaggacgttggggattcttctcgacaaggaatgtg 319

                                                                       
Query: 541 ccagctcaattcagcaccatttggtatcctcataggtctttgcttattctattatattaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccagctcaattcagcaccatttggtatcctcataggtctttgcttattctattatattaa 259

                                                                     
Query: 601 atgttaatttttctctcttgttctttcttaaaagtttaatttgaatgtatgaataaga 658
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgttaaattttctctcttgttctttcttaaaagtttaatttgaatgtatgaataaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)