Query= MSMg01no323_n09.b1 MSMg01no323_n09.b1 CHROMAT_FILE:
MSMg01no323_n09.b1 PHD_FILE: MSMg01no323_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:50 2005
(309 letters)
>mm_chr8_18750042_18750750
Length = 709
Score = 559 bits (289), Expect = e-164
Identities = 301/305 (98%), Gaps = 1/305 (0%)
Strand = Plus / Minus
Query: 1 tagataagcctggtggttttttttattatcttattatggtgctcaggctatggaaataat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 670 tagataagcctggtggttttttttattgtcttattatggtgctcaggctatggaaataat 611
Query: 61 tccagcacctaaagttgtttccctcttattccccattctccccaacagccttgcgctgtg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 610 tccagcacctaaagttgtttccctcttattccccattctccccaacagccgtgcgctgtg 551
Query: 121 ctgctggggatgcaactcagggctttgctcgccttaggcaagcacttagcgagggcttac 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctgct-gggatgcaactcagggctttgctcgccttaggcaagcacttagcgagggcttac 492
Query: 181 tcctcctaaccagcatcgataatggtttcaggtgacagagaagtccccagtcccaatctc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcctcctaaccagcatcgataatggtttcaggtgacagagaagtccccagtcccaatctc 432
Query: 241 tgcactcctcacagcagccagtcacactgatgcttcttcctcttgcatgtccccaaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgcactcctcacagcagccagtcacactgatgcttcttcctcttgcatgtccccaaatta 372
Query: 301 acacc 305
|||||
Sbjct: 371 acacc 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_n09.g1 MSMg01no323_n09.g1 CHROMAT_FILE:
MSMg01no323_n09.g1 PHD_FILE: MSMg01no323_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:50 2005
(621 letters)
>mm_chr8_18587380_18588400
Length = 1021
Score = 870 bits (450), Expect = 0.0
Identities = 550/632 (87%), Gaps = 78/632 (12%)
Strand = Plus / Plus
Query: 1 tcactggtgtgcctgggccctgggaagcggggagtaaaacatctctgggatcaagagaag 60
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tcactggtctgcctgggccctgggaagcgggaagtaaaacatctctgggatcaagagaag 260
Query: 61 agagggactataccagaggcctgtggaaacacggagggaaacagtcttaagtgattactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagggactataccagaggcctgtggaaacacggagggaaacagtcttaagtgattactg 320
Query: 121 ctgagaataagaggtggaagcttgcccggcagtcttaggtccagggactcaaaattgacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagaataagaggtggaagcttgcccggcagtcttaggtccagggactcaaaattgacc 380
Query: 181 agttgtgattcttgtccttggcgagcagctggaaatgccctgggttccatctggtgagca 240
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 agttgtgattcttgtccttggcgagcagctggaaatgccctgggtt---tc--------- 428
Query: 241 gctggaaatgccctgggttccatctggccagcagctgtttttgccctgggttccatctgg 300
||||||
Sbjct: 429 ------------------------------------------------------atctgg 434
Query: 301 cgagcagctagaaatgcagaacgtgtttgggggctggggctggttcctggtgtgatttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cgagcagctagaaatgcagaacgtgtttgggggctggggctggttcctggtgtgatttct 494
Query: 361 tcttatcttctgtcccagctagagcacacctgcatgaaggtttgaggttgtggcccagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcttatcttctgtcccagctagagcacacctgcatgaaggtttgaggttgtggcccagag 554
Query: 421 gcacatgtggaggcaaactgg-----tcagctcatctctccatgcctacaaaaagcttct 475
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 555 gcacatgtggaggcaaactggactggtcagctcatctctccatgcctacaaaaagcttct 614
Query: 476 gtaactatcaactaatggcaacccatttctggaccatgcctgccatgg------aggaaa 529
||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 615 gtaactatcaactaatggcaacccatttctggaccatgcctgcca-ggcatgataggaaa 673
Query: 530 tgtgctgccgcttcctatctcttaaactctcacctgtaaacctgcaataaattccctgct 589
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgtgccgccgcttcctatctcttaaactctcacctgtaaacctgcaataaattccctgct 733
Query: 590 ccttatctgtgaaattcgtaccagttcagacg 621
||||| ||||||||||||||||||||||||||
Sbjct: 734 ccttacctgtgaaattcgtaccagttcagacg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
