BAC Information

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BAC

Clone NameMSMg01-324A12
Chromosome8 (Build37)
Map Location 73,150,882 - 73,331,655
singlet/doubletdoublet
Overlap geneGdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3
Upstream geneEG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25
Downstream geneIl12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324A12.T7 (MSMg01no324_a12.b1)MSMg01-324A12.TJ (MSMg01no324_a12.g1)
ACCAG442288AG442289
length727731
length of high quality
(start - end)
592 (68 - 659)599 (76 - 674)
definitionCHROMAT_FILE: MSMg01no324_a12.b1 PHD_FILE: MSMg01no324_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:14 2005CHROMAT_FILE: MSMg01no324_a12.g1 PHD_FILE: MSMg01no324_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,331,070 - 73,331,655)(73,150,882 - 73,151,480)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGATAGCTAGGGCTACACAGAGAAACCCTGTCTCAAATTAAAA
GTTCCAGGGCTCACACAGATGATAATCTTTTGTGGGTTGGGCATAAGGGG
AAACTGAGGCCTATACAGATGAGTTCATGGTGCTCTTTTGGGGGGAGGGC
AGCTTGGAGCAGGGGCTATGTTCTCAGGACAGCTGGCTCAGCCTGGCCCA
GGGTCAAGTGTCCTGAAGGCTATGAGGTCAGCAGCTCTGGGACAATGAGG
CTGTGTCTCTGCCCTGGTTCACTCCACCCGTGTGACCCACACAGACTGGC
TCCCTGGTGCTCACAGGGAGGGACCAGGGGCTGGGGGAGGGATGGAGTCA
GGGAGATGGAATACACACACAGGGAAAGCCAGGTGCAGTAACACAAACCT
GCCATCCAAGCACTTACCTGGAAGGCTGAGGCAGGGGTACTGCTGTGAGT
TCTAGGCCATTCAGAACATTCTAGGTCGTGGAAGAGTATAGCATGAGTTT
GACCTGCACCCTGCCCCCACCATTGTCTTAAAATGGCCTGCTCTCAGAAA
GACTGCTATGGCTGACTCCACATCACAGATAAAGAAACTGAGTCCAGGGG
CCCCAGTTGGAGGCAAAGAGATGGAGTGATTCAGCATCACGGGGGCCAAA
CTTGGTTCTTTGGGAGCTGTCCACATC
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGAGGTCCAAACGCTAAGCCTT
CCGGTAGATTTGATATCTGGCAGTCAGTCGCCCTGTGGATCTTAAGTGAC
TGTTGCGTTACCAGGTTTTCTTTTGTTTTAAGGAGAAGTTAGATAGAGAG
TCTTTGCCAACACCCGTTGCGGGCTGTCAGGATTTAGACAGAGGCCAGAG
GGACCTTGGGCCAACACCAGAGAGCTCTGGCCAGGAGGCTGCTGCAACTG
CCTCCACCTCTGTTTCTGCCGCTGCCACTTCTGCTGCTCCAAAATGCTGC
ATAGGTCACTCTCCACTGAGTCAGGTCAGTCTGAGTCATCGAGGGGTGCA
GGGGGCTTCAGGAGAGCAGTTTCCTTCCCTGAGCAGTTACAGCTCTTAAG
AGAGAAGCTCTCATAAGAAATTCTTTATTCCTTCTGGATAGGATTCTTTT
TTTTTTTTTAAAGATTTATTTATTGATTATATGTAAGTACACTGTAGCTG
TCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACCGATGGTTGTG
AGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAG
TCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAGATAGGATTCTT
TTTTTTTTTTTTTAAAGATTTATTTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_a12.b1 MSMg01no324_a12.b1 CHROMAT_FILE:
MSMg01no324_a12.b1 PHD_FILE: MSMg01no324_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:14 2005
         (592 letters)



>mm_chr8_73331070_73332061
          Length = 992

 Score = 1110 bits (574), Expect = 0.0
 Identities = 583/586 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctacacagagaaaccctgtctcaaattaaaagttccagggctcacacagatgataatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggctacacagagaaaccctgtctcaaattaaaagttccagggctcacacagatgataatc 527

                                                                       
Query: 61  ttttgtgggttgggcataaggggaaactgaggcctatacagatgagttcatggtgctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttttgtgggttgggcataaggggaaactgaggcctatacagatgagttcatggtgctctt 467

                                                                       
Query: 121 ttggggggagggcagcttggagcaggggctatgttctcaggacagctggctcagcctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttggggggagggcagcttggagcaggggctatgttctcaggacagctggctcagcctggc 407

                                                                       
Query: 181 ccagggtcaagtgtcctgaaggctatgaggtcagcagctctgggacaatgaggctgtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccagggtcaagtgtcctgaaggctatgaggtcagcagctctgggacaatgaggctgtgtc 347

                                                                       
Query: 241 tctgccctggttcactccacccgtgtgacccacacagactggctccctggtgctcacagg 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctgccctggcacactccacccgtgtgacccacacagactggctccctggtgctcacagg 287

                                                                       
Query: 301 gagggaccaggggctgggggagggatggagtcagggagatggaatacacacacagggaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 286 gagggaccaggggctgggggagggatggagtcagggagatggaatagacacacagggaaa 227

                                                                       
Query: 361 gccaggtgcagtaacacaaacctgccatccaagcacttacctggaaggctgaggcagggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gccaggtgcagtaacacaaacctgccatccaagcacttacctggaaggctgaggcagggg 167

                                                                       
Query: 421 tactgctgtgagttctaggccattcagaacattctaggtcgtggaagagtatagcatgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tactgctgtgagttctaggccattcagaacattctaggtcgtggaagagtatagcatgag 107

                                                                       
Query: 481 tttgacctgcaccctgcccccaccattgtcttaaaatggcctgctctcagaaagactgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tttgacctgcaccctgcccccaccattgtcttaaaatggcctgctctcagaaagactgct 47

                                                         
Query: 541 atggctgactccacatcacagataaagaaactgagtccaggggccc 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  atggctgactccacatcacagataaagaaactgagtccaggggccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no324_a12.g1 MSMg01no324_a12.g1 CHROMAT_FILE:
MSMg01no324_a12.g1 PHD_FILE: MSMg01no324_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:14 2005
         (599 letters)



>mm_chr8_73150682_73151680
          Length = 999

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagaggtccaaacgctaagccttccggtagatttgatatctggcagtcagtcgccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaggtccaaacgctaagccttccggtagatttgatatctggcagtcagtcgccctg 260

                                                                       
Query: 61  tggatcttaagtgactgttgcgttaccaggttttcttttgttttaaggagaagttagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatcttaagtgactgttgcgttaccaggttttcttttgttttaaggagaagttagata 320

                                                                       
Query: 121 gagagtctttgccaacacccgttgcgggctgtcaggatttagacagaggccagagggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagtctttgccaacacccgttgcgggctgtcaggatttagacagaggccagagggacc 380

                                                                       
Query: 181 ttgggccaacaccagagagctctggccaggaggctgctgcaactgcctccacctctgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggccaacaccagagagctctggccaggaggctgctgcaactgcctccacctctgttt 440

                                                                       
Query: 241 ctgccgctgccacttctgctgctccaaaatgctgcataggtcactctccactgagtcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccgctgccacttctgctgctccaaaatgctgcataggtcactctccactgagtcagg 500

                                                                       
Query: 301 tcagtctgagtcatcgaggggtgcagggggcttcaggagagcagtttccttccctgagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagtctgagtcatcgaggggtgcagggggcttcaggagagcagtttccttccctgagca 560

                                                                       
Query: 361 gttacagctcttaagagagaagctctcataagaaattctttattccttctggataggatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttacagctcttaagagagaagctctcataagaaattctttattccttctggataggatt 620

                                                                       
Query: 421 ctttttttttttttaaagatttatttattgattatatgtaagtacactgtagctgtcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttttttttttttaaagatttatttattgattatatgtaagtacactgtagctgtcttc 680

                                                                       
Query: 481 agacactccagaagagggagtcagatctcattaccgatggttgtgagccaccatgtggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agacactccagaagagggagtcagatctcattaccgatggttgtgagccaccatgtggtt 740

                                                                      
Query: 541 gctgggatttgaactccggaccttcggaagagcagtcgggtgctcttacccactgagcc 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgggatttgaactccggaccttcggaagagcagtcgggtgctcttacccactgagcc 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)