BAC Information

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BAC

Clone NameMSMg01-324L23
Chromosome8 (Build37)
Map Location 11,218,336 - 11,378,459
singlet/doubletdoublet
Overlap geneCol4a1, Col4a2
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneRab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324L23.T7 (MSMg01no324_l23.b1)MSMg01-324L23.TJ (MSMg01no324_l23.g1)
ACCAG442816AG442817
length741738
length of high quality
(start - end)		631 (48 - 678)610 (75 - 684)
definitionCHROMAT_FILE: MSMg01no324_l23.b1 PHD_FILE: MSMg01no324_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:08 2005CHROMAT_FILE: MSMg01no324_l23.g1 PHD_FILE: MSMg01no324_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,218,336 - 11,218,965)(11,377,850 - 11,378,459)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGG
AATTCCTCCCAAAGACCCGAGAGGAGATAGGAAGGCAGGCTTCCAGTTTT
GACTATCACTTCCCAGCCTGTGCTGAGAAACACGTCCCCAGCTAACCCAC
TTATCCATGGGTAGCTCAGACTTCACTTTCCAGTGTGCATCACTTATTCA
TTTTTAGCAATCATTACAGACACTATAGCCATTGTCAGCCAATGCCAATC
AGTGTCAGTTGAAAGCCATCCACCCTAGATGAGAGACACGGCTGTCAGGT
CCTGGATCTTCCAAGTGCTGCCCTGCGCACATCCCACCAGCCCCGTGCAC
ACACAGTGTATGTTAGAGACTTTTGAGTCCACAGTCAGGTTACCTGGCAA
GCCCATTCCTCCAACTGATCCTTTGGGTCCAGGGAGTCCAGGGGATCCTG
GTGTCCCACTAAGGCCTGGGTCACCTTTAGGCCCTAGAATAACGGAGAAA
AATCCCACAGGTCAACATCTGCGGAGAGCACTGAGAAGCAGGTTTCTTGA
CAACGACTGTGGCTATACTGTCCACACCTACCTGGCTGTCCGGGATGCCC
TGCCTGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGG
AACCTTTATCACCAGTGGGTCCGATTTGTCCTGTAGGCCACAAAAAAACA
TAGTGAGCTTCCACATCTGCTTCGGAAGCAATTGCTGTAGA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGACTCACAGTTTCCAATGAGATTT
TTCAAATTCAACCCAAAGCAAAGAGAAACAACAAAAACTGACCACAGCAC
TACTAAAAGTAGACACATTTTTCCACGAATGAGGAAATGCCCTAAAAATA
ATTTTTGACCCCACTCATTTACCCACATTTATAATTTACTTGTGACCCGA
ATATTGAATAAACAGCAGGAAAAGATACCGCCAGACACAAACAAGAGGCT
TCCACGGATACATGTCTGTTTAGAAAATAGTTGTCGATACATAAATAAGG
ATTTGATTCAAGTTTGGTTATAATCCCAAGCGTTCAGAGTCCCATGGGAA
CGAGGACTCACTGACCACAGGCTTGATGTGAGGGGAGCTCTCTGGGGTCC
TCGGCTGCCTGAGGGGGCCTCTCAGGCATGCTCAATGCTCTGTATAGAAT
TCCTCTCCGAGGAACATGCTGGGAACGTCATTGAGAATCACCATCAATGG
AGTCAAAGGCTGTGAGAACAGCTCCCCAGTCGCCGGAGGATGAGTTTCCG
TTGCTCTGTGGAGTAGCCAGCCTGAACTCAGAAGTCACAGATCGGACTGC
TCACCACCATTGGAGTTTTGAAACAGGACTTTTGATGGAGCATCCTCCAG
CGGTTGGCAACCTGGAGGACCTAATGCTAAGTCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_l23.b1 MSMg01no324_l23.b1 CHROMAT_FILE:
MSMg01no324_l23.b1 PHD_FILE: MSMg01no324_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:08 2005
         (631 letters)



>mm_chr8_11218135_11219165
          Length = 1031

 Score = 1180 bits (610), Expect = 0.0
 Identities = 625/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcctcccaaagacccgagaggagataggaaggcaggcttccagttttgactatca 61
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcctcccaaagacctgagaggagataggaaggcaggcttccagttttgactatca 261

                                                                       
Query: 62  cttcccagcctgtgctgagaaacacgtccccagctaacccacttatccatgggtagctca 121
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 262 cttcccagcctgtgctgagaaacacctccccagctaacccacttatccatgggtagctca 321

                                                                       
Query: 122 gacttcactttccagtgtgcatcacttattcatttttagcaatcattacagacactatag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gacttcactttccagtgtgcatcacttattcatttttagcaatcattacagacactatag 381

                                                                       
Query: 182 ccattgtcagccaatgccaatcagtgtcagttgaaagccatccaccctagatgagagaca 241
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 ccattgtcagccaatgccaatcagtgtcagtcgaaagccatccaccctagatgagagaca 441

                                                                       
Query: 242 cggctgtcaggtcctggatcttccaagtgctgccctgcgcacatcccaccagccccgtgc 301
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cggctgtcaggccctggatcttccaagtgctgccctgcgcacatcccaccagccccgtgc 501

                                                                       
Query: 302 acacacagtgtatgttagagacttttgagtccacagtcaggttacctggcaagcccattc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acacacagtgtatgttagagacttttgagtccacagtcaggttacctggcaagcccattc 561

                                                                       
Query: 362 ctccaactgatcctttgggtccagggagtccaggggatcctggtgtcccactaaggcctg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctccaactgatcctttgggtccagggagtccaggggatcctggtgtcccactaaggcctg 621

                                                                       
Query: 422 ggtcacctttaggccctagaataacggagaaaaatcccacaggtcaacatctgcggagag 481
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 622 ggtcacctttaggccctagaataacggagaaaaatcccacaggtaaacatctgcggagag 681

                                                                       
Query: 482 cactgagaagcaggtttcttgacaacgactgtggctatactgtccacacctacctggctg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cactgagaagcaggtttcttgacaacgactgtggctatactgtccacacctacctggctg 741

                                                                       
Query: 542 tccgggatgccctgcctgcccatccttcccaggtactcctggtgttccagggtctcctcg 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tccgggatgccctgcctgcccatccttcccaggtactcctggtgttccagggtctcctcg 801

                                         
Query: 602 ggaacctttatcaccagtgggtccgatttg 631
           ||||||||||||||||||||||||||||||
Sbjct: 802 ggaacctttatcaccagtgggtccgatttg 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_l23.g1 MSMg01no324_l23.g1 CHROMAT_FILE:
MSMg01no324_l23.g1 PHD_FILE: MSMg01no324_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:08 2005
         (610 letters)



>mm_chr8_11377650_11378659
          Length = 1010

 Score = 1164 bits (602), Expect = 0.0
 Identities = 608/610 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggactcacagtttccaatgagatttttcaaattcaacccaaagcaaagagaaacaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tggactcacagtttccaatgagatttttcaaattcaacccaaagcaaagagaaacaacaa 751

                                                                       
Query: 61  aaactgaccacagcactactaaaagtagacacatttttccacgaatgaggaaatgcccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aaactgaccacagcactactaaaagtagacacatttttccacgaatgaggaaatgcccta 691

                                                                       
Query: 121 aaaataatttttgaccccactcatttacccacatttataatttacttgtgacccgaatat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 690 aaaataatttttgaccccactcatttacccacatttataaattacttgtgacccgaatat 631

                                                                       
Query: 181 tgaataaacagcaggaaaagataccgccagacacaaacaagaggcttccacggatacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgaataaacagcaggaaaagataccgccagacacaaacaagaggcttccacggatacatg 571

                                                                       
Query: 241 tctgtttagaaaatagttgtcgatacataaataaggatttgattcaagtttggttataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tctgtttagaaaatagttgtcgatacataaataaggatttgattcaagtttggttataat 511

                                                                       
Query: 301 cccaagcgttcagagtcccatgggaacgaggactcactgaccacaggcttgatgtgaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cccaagcgttcagagtcccatgggaacgaggactcactgaccacaggcttgatgtgaggg 451

                                                                       
Query: 361 gagctctctggggtcctcggctgcctgagggggcctctcaggcatgctcaatgctctgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gagctctctggggtcctcggctgcctgagggggcctctcaggcatgctcaatgctctgta 391

                                                                       
Query: 421 tagaattcctctccgaggaacatgctgggaacgtcattgagaatcaccatcaatggagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tagaattcctctccgaggaacatgctgggaacgtcattgagaatcaccatcaatggagtc 331

                                                                       
Query: 481 aaaggctgtgagaacagctccccagtcgccggaggatgagtttccgttgctctgtggagt 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 330 aaaggctgtgagaacagctccccagtcgccggaggacgagtttccgttgctctgtggagt 271

                                                                       
Query: 541 agccagcctgaactcagaagtcacagatcggactgctcaccaccattggagttttgaaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agccagcctgaactcagaagtcacagatcggactgctcaccaccattggagttttgaaac 211

                     
Query: 601 aggacttttg 610
           ||||||||||
Sbjct: 210 aggacttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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