TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGCTTCCCGGGCTGACAATGGAGAACGTGCTGTCTTTCCAGGTGGT
TGTTAACTCATTCTCAGCCTTACATTGGAGGGGCAGTGTGAGACCAAACA
GAAAACTATTAAACAGAGTGCACTCCAGATAGTGTCTTACTACCTTCTTC
ATAAATAAGGGTCCTCTCTTAAGGAGTATAGCTACCTTCTTTAGAAGATC
AATATATTTCCATGCAGCTGATAACAACCACCCCCAAAAGAGGAAAGATG
CTTATTCATCAAAAGAGCCCAGGTGACACAATGACCACGTTCATGGTGAC
TCCTCAGCTAGAAGAGCTAAACCTCGGGAAGACAGAGTTGAGTAGGCAAG
GCTAGCTGCTCCCGGGAGAGTTATAATGAGGAGTGAGATGCCATGGGCTT
CCTTTGTATCCAATGAGATTGTGTGTTCCCAGAACTATAGTTGAGAAAAG
GGGCAGCTTGCTGACCATAGGCTGTGCTTTGTCTGCCACCCAGCTGTTTG
TCGTTCCCTGCTCTGATGACACTTCCTTCTAAATTTACAAAGAGGTCTTG
GGCCTTGCAAGAATTATCTGCAGAGCAGACACTTCTCTTACAACCTTTAT
TTAGAGGAGCAGTGGTGGTGCACGCCTTTAATCCAGCACTAGGGAGGCAG
AGGCAGACAGATTTAATGTGAGTTCGAAGCCAG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAATTTATACAAATAATTTCAAG
CCCCTTATAGAATGAATAATAGCTACAATAGAGCTCTGCAAATCTTCATG
TGTCACGGGCTAATTAAGCTAGAAAAAGAAAGCAGACTTGGAACAAATTT
ACCACCAAGGAAAACATTCCTTTTAGGTTAGCTGTGAAACCGTTATCTGG
TAACTAAGGGTCACAAACTGGTGTACAATTTATTGTAGATGCAATGACAG
AAAATAAAATATTGACTAGTTTATCTATACAAAACTTTAAAATAATTAGA
CACACAGCAGATGATTGTCTTTAGACAAAACCATGCTAACTTGTGACATA
AAAATATTGCTTTACTTGACAGGCAGAAGCAGGCAGATTTCTGGGTTCGA
GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGA
GAAACACTGTCTCAAAAAAAAAAAAACAAAAACAAAAAAAAAGTAAAAAT
AAATTTAAAAAAAATATTGCTTTAAGCTTAAAATGATCTTCTGAGGGCTA
GCCATAGATAATAAATGTTTAGTGAGTTTAGAGTTTCTTAATGGAAAGAC
ATGTAAACAACTCTGCTGCAACTCTTTAAACCTTATCAATCTATGGCATT
AATTACTGCCTTAAACTTACTATAACCTTATTGC

Query= MSMg01no324_m17.b1 MSMg01no324_m17.b1 CHROMAT_FILE:
MSMg01no324_m17.b1 PHD_FILE: MSMg01no324_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:11 2005
         (690 letters)



>mm_chr8_28243073_28244162
          Length = 1090

 Score = 1137 bits (588), Expect = 0.0
 Identities = 649/686 (94%), Gaps = 26/686 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcttcccgggctgacaatggagaacgtgctgtctttccaggtggttgttaac 64
           |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcctgcttcttgggctgacaatggagaacgtgcagtctttccaggtggttgttaac 264

                                                                       
Query: 65  tcattctcagccttacattggaggggcagtgtgagaccaaacagaaaactattaaacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcattctcagccttacattggaggggcagtgtgagaccaaacagaaaactattaaacaga 324

                                                                       
Query: 125 gtgcactccagatagtgtcttactaccttcttcataaataagggtcctctcttaaggagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcactccagatagtgtcttactaccttcttcataaataagggtcctctcttaaggagt 384

                                                                       
Query: 185 atagctaccttctttagaagatcaatatatttccatgcagctgataacaaccacccccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagctaccttctttagaagatcaatatatttccatgcagctgataacaaccacccccaa 444

                                                                       
Query: 245 aagaggaaagatgcttattcatcaaaagagcccaggtgacacaatgaccacgttcatggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 aagaggaaagatgcttattcatcaaaagagcccaggtgacacaatgaccacattcatggt 504

                                                                       
Query: 305 gactcctcagctagaagagctaaacctcgggaagacagagttgagtaggcaaggctagct 364
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gactcctcagctagaagcgctgaacctcgggaagacagagttgagtaggcaaggctagct 564

                                                                       
Query: 365 gctcccgggagagttataatgaggagtgagatgccatgggcttcctttgtatccaatgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctcccgggagagttataatgaggagtgagatgccatgggcttcctttgtatccaatgag 624

                                                                       
Query: 425 attgtgtgttcccagaactatagttgagaaaaggggcagcttgctgaccataggctgtgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attgtgtgttcccagaactatagttgagaaaaggggcagcttgctgaccataggctgtgc 684

                                                                       
Query: 485 tttgtctgccacccagctgtttgtcgttccctgctctgatgacacttccttctaaattta 544
           |||||||| |||||||||||||||| |||||||||||||||                   
Sbjct: 685 tttgtctgtcacccagctgtttgtccttccctgctctgatg------------------- 725

                                                                       
Query: 545 caaagaggtcttgggccttgcaagaattatctgcagagcagacacttctcttacaacctt 604
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 -------gtcttgggccttgcaagaattatctgcagagcagacacttctcttacaacctt 778

                                                                       
Query: 605 tatttagaggagcagtggtggtgcacgcctttaatccagcactagggaggcagaggcaga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 779 tatttagaggagcagtggtggtgcacgcctttaatccagcactagggaggcagaggcagg 838

                                     
Query: 665 cagatttaatgtgagttcgaagccag 690
           | |||||||||||||||||| |||||
Sbjct: 839 cggatttaatgtgagttcgaggccag 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)