BAC Information

Click to search

BAC

Clone NameMSMg01-325A05
Chromosome8 (Build37)
Map Location 10,917,406 - 11,090,469
singlet/doubletdoublet
Overlap geneLOC665306, Irs2
Upstream geneLig4, Abhd13, Tnfsf13b, Myo16, LOC100040008, LOC384782, LOC100040507
Downstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325A05.T7 (MSMg01no325_a05.b1)MSMg01-325A05.TJ (MSMg01no325_a05.g1)
ACCAG443007AG443008
length715725
length of high quality
(start - end)
249 (60 - 308)117 (129 - 245)
definitionCHROMAT_FILE: MSMg01no325_a05.b1 PHD_FILE: MSMg01no325_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:28 2005CHROMAT_FILE: MSMg01no325_a05.g1 PHD_FILE: MSMg01no325_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,917,406 - 10,917,652)(11,090,353 - 11,090,469)
sequence
GCGGCGCTAAACGACTCCTATATTTCGAAGTCGGCGGAATTAAAGCACAT
TACATAAAAAAACAAGGATTCCTAACGTTGGCCTCAGATCCCCATGCTCG
CCTGGCCAGCCCCGGCTGACTGAGCTATCTCCCAGCCCTGTCCAGATGAC
TATGTAACGTAAAAGCCTGGGGCTTGTGCATTGTTTTGTTGTTTGTTTGT
TTCATGAATATTTGATGGTATCCTGATTTTGGCTAAGGTAAAATGGTACA
AATGTGAAGGCTGGCCCTGCCAAGTTGGGCATCCAGCCTATAGACGCTGT
CATGCATTTTATTTTATGCAGGGAGGAGCAGATTCAACACATGAGTAGGA
GAGTAATTGACTCTGTGGTCTCCTGTTCTCAGGTGAGTTTTCAGAGCACC
AGAGAAGACCTCTGAAAGCCATTGTCTTCTCAAGGGAGAAGATTTGGTTT
TCCTTGGAGAACCCACTGGTGGGTCCCGAAAGGAGGACTATAGACAAGCC
TGGACATACGGGATAAGAGCTCAGAGCTCAAAGATGCACGAGGAGGAGGA
GCCTCCATGCTCATTCTCAGGCTCCCCCAAACCTAAACTATCTGAACACT
GAAAGAAACAAAAGAGGTTGACAAGAGGAAGGGAATTATCAGGAGTATGA
TGTACAGGAGAGGGTAACATGAGGGAAGATGCTCAAAAGACCTTATGATC
AATTACATATGATAN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGCACCCGGTNGAAC
TATAGAAGGATTGCAGCACTCCACGGCACTGACTTACGTTTCAAGTTCAG
CGGGAGGGACCACCATTTTACCGGGAGGGATGGTGGAGCCTTTGGAAATA
TGGCTTGTCATTCCATTGCTTGCTGTCTTCTGAGGTGAAAGGCTAACTTG
CTTGATTGTTTTTGCCCGAGTTACAAGTTTAGGATGACCGAGGGACCATA
TATTTGAGTCACATAACAGACGAATACCCATGAGAGATCTGTAGGGAGCA
ACATGAACACCCCAGCTTTGCATAGTGTAACTACCCAAACCAGACCGAGC
ATTTTCAGTCATCTGGATGCTGACCGGAAACTGGGGGCATCGCGATTTAA
GGAGAATCCTCTGCACAACCTTCCCTGGCTTCTTGTGCATGCAGAAGCAG
GAAGCGGCCAAGATGACTCCATTCGACCTCCATGCTGTCGTCATTCCCTG
AGGGGTGAGCTCTAACCATGTTAATCTTCACTAATATGAGGGCCTCACCC
TAGGAAAGTGGACTCTGTTCTTCCGGGAAGACTGAAGATCTTACCTCTGT
GTTGTAAAGCCACCTGGACCATTGCCCTCTGAATGCTCAGGCTAACTTAG
AATCCTTTCTTGTACAACTGGCCTTCCTAGCAAATGTTTACTCATGATAT
GCTTGCCCTGTGCTCATATTAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_a05.b1 MSMg01no325_a05.b1 CHROMAT_FILE:
MSMg01no325_a05.b1 PHD_FILE: MSMg01no325_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:28 2005
         (249 letters)



>mm_chr8_10917206_10917854
          Length = 649

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaaggattcctaacgttggcctcagatccccatgctcgcctggccagccccggctga 60
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aaacacggattcctaacgttggcctcggatccccatgctcgcctggccagccccggctga 260

                                                                       
Query: 61  ctgagctatctcccagccctgtccagatgactatgtaacgtaaaagcctggggcttgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagctatctcccagccctgtccagatgactatgtaacgtaaaagcctggggcttgtgc 320

                                                                       
Query: 121 attgttttgttgtttgtttgtttcatgaatatttgatggtatcctgattttggctaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgttttgttgtttgtttgtttcatgaatatttgatggtatcctgattttggctaaggt 380

                                                                       
Query: 181 aaaatggtacaaatgtgaaggctggccctgccaagttgggcatccagcctatagacgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatggtacaaatgtgaaggctggccctgccaagttgggcatccagcctatagacgctg 440

                  
Query: 241 tcatgca 247
           |||||||
Sbjct: 441 tcatgca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no325_a05.g1 MSMg01no325_a05.g1 CHROMAT_FILE:
MSMg01no325_a05.g1 PHD_FILE: MSMg01no325_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:28 2005
         (117 letters)



>mm_chr8_11090153_11090669
          Length = 517

 Score =  226 bits (117), Expect = 3e-64
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatggtggagcctttggaaatatggcttgtcattccattgcttgctgtcttctgaggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gatggtggagcctttggaaatatggcttgtcattccattgcttgctgtcttctgaggtga 258

                                                                    
Query: 61  aaggctaacttgcttgattgtttttgcccgagttacaagtttaggatgaccgaggga 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaggctaacttgcttgattgtttttgcccgagttacaagtttaggatgaccgaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)