BAC Information

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BAC

Clone NameMSMg01-325F22
Chromosome8 (Build37)
Map Location 74,890,527 - 74,891,172
singlet/doubletsinglet
Overlap geneEps15l1
Upstream gene2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2
Downstream geneCalr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325F22.T7 (MSMg01no325_f22.b1)MSMg01-325F22.TJ (MSMg01no325_f22.g1)
ACCAG443276AG443277
length744782
length of high quality
(start - end)
646 (50 - 695)---
definitionCHROMAT_FILE: MSMg01no325_f22.b1 PHD_FILE: MSMg01no325_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:52 2005CHROMAT_FILE: MSMg01no325_f22.g1 PHD_FILE: MSMg01no325_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGG
AATTCCCTCCCACTGCCCCCTTCAGGTGGACAGAACTAATGGGACAGGAT
TGCTGCCCTATGACTCCCGCACCACCAACCACATGACCCCAGGAGTAGAA
GGATGGACTCTGCTGGGGAAACCATGCCCATGAGGAGCATTTGCAAGGCA
CAGAACACTGCTCTAAGGACAGATCCTTGCCAGGAGGGGAGCAGAGTAGA
CAAGGTGCTGAGTCAGGCAAGTGCAGGGGCTGAGACAGCACACCTGTGAC
ACTACTGTCCTTAAATACTTTGCTGTCACAGGCTGGCTTGACCTTTTTAT
TCATTGCCAAAGATGACACCAACATATATCAAACCAACTGAAACAATGCA
CCTGGTGTGCTGGGCCAGGATCCGCCACTTAATCCCTCTCACCAAGCAAG
GCCAGGTCAGCAAGGTCCTGATAAGGATGAACCTTACTGCTTTCTTCTCT
GCCATGTCTGTCTCCCTGTGGAGCCCAGGTTGGCCTCCAAGTCACAGTAG
TCCTCCCACCACCTGAGCCTCTCTAGTACTAGAGGAAGACCTGCACCCCA
TCAGTTCATCTGGGGTGCTACCTGCGGTGTGGCTCTCTAACCATGTCCCT
TTTAATGAGTGAAGCCAGCCATAGTGTATTCCAGAGCCAGAGCAGACTAG
GAAGCCTTTCAGACACTCCAGCTCAAGACAGGGCTACGGCTTTG
ACAGTGGGAGGNCCGGNGGNCGGCGGGNCTTCCCCACCCGNAAANNANNA
GAAGGATTTGACNNNCACNNNGANAGNANGAAANGGNNCNCNNGGAAACN
CGGNCANCNGGAAGNNNGGACCCAAANGNNNNANAGAAAGNGNAGGNGGN
AAGNNNNGGNNGGNNANGGGNGNGAGGGGAANAGAANNGAAAGGAANAGN
NGGGNGGGNAAGNNANGGAANAGNNAANNNNANGGANNNAAAGAANGGNA
TTTTTTTTTTTNAAGNTCTTGGAGAGAGCTCCTGGAGAGCTTTGAAATGG
NTAAGGNTAAAANGGCATTTTACTTTCTTACAAACAAACACACCCACGAC
CCCACAAACTTTTTTTTTTCCCCCCCCCCCTCTCTAACTTTCTTTCATTT
GTTGTTGTTGCTGCCGCCCCCCCTGTTGTTTTATAAAAATAACCACTGCC
ACTCTTTTCCCCTTCCCTTCTTTCCCCTTCATCCCCTTCATTTATTTTTC
TCCCCCCTTATCCCTCCCCCTCCCCTTTTCTTCTTTTACTTCCAATCGTT
TCCTCTCCTTTCTTTTTTTTCGCCTCCCCCAACCTATACTTTTTTTTCCC
CCCCCACCCTTCCCACATATCCCCTATTTCCCCTTTACCATTCCCTCCCT
TTCCCCACACCAACAAACCACCCCTTTTTTTTTTTTTTTTTCCAAACCAC
TCCCCCAATCCTTCCATTCCACTCATCTCCCCCTATATTCCCCTCACTTT
TTTCCACCCCTATATATCATTTATCTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_f22.b1 MSMg01no325_f22.b1 CHROMAT_FILE:
MSMg01no325_f22.b1 PHD_FILE: MSMg01no325_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:52 2005
         (646 letters)



>mm_chr8_74890327_74891372
          Length = 1046

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattccctcccactgcccccttcaggtggacagaactaatgggacaggattgctgccct 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccctcccactgcctccttcaggtggacagaactaatgggacaggattgctgccct 260

                                                                       
Query: 61  atgactcccgcaccaccaaccacatgaccccaggagtagaaggatggactctgctgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgactcccgcaccaccaaccacatgaccccaggagtagaaggatggactctgctgggga 320

                                                                       
Query: 121 aaccatgcccatgaggagcatttgcaaggcacagaacactgctctaaggacagatccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccatgcccatgaggagcatttgcaaggcacagaacactgctctaaggacagatccttg 380

                                                                       
Query: 181 ccaggaggggagcagagtagacaaggtgctgagtcaggcaagtgcaggggctgagacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggaggggagcagagtagacaaggtgctgagtcaggcaagtgcaggggctgagacagc 440

                                                                       
Query: 241 acacctgtgacactactgtccttaaatactttgctgtcacaggctggcttgaccttttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacctgtgacactactgtccttaaatactttgctgtcacaggctggcttgaccttttta 500

                                                                       
Query: 301 ttcattgccaaagatgacaccaacatatatcaaaccaactgaaacaatgcacctggtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcattgccaaagatgacaccaacatatatcaaaccaactgaaacaatgcacctggtgtg 560

                                                                       
Query: 361 ctgggccaggatccgccacttaatccctctcaccaagcaaggccaggtcagcaaggtcct 420
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggccaggatctgtgacttaatccctctcaccaagcaaggccaggtcagcaaggtcct 620

                                                                       
Query: 421 gataaggatgaaccttactgctttcttctctgccatgtctgtctccctgtggagcccagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gataaggatgaaccttactgctttcttctctgccatgtctgtctccctgtggagcccagg 680

                                                                       
Query: 481 ttggcctccaagtcacagtagtcctcccaccacctgagcctctctagtactagaggaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggcctccaagtcacagtagtcctcccaccacctgagcctctctagtactagaggaaga 740

                                                                       
Query: 541 cctgcaccccatcagttcatctggggtgctacctgcggtgtggctctctaaccatgtccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgcaccccatcagttcatctggggtgctacctgcggtgtggctctctaaccatgtccc 800

                                                         
Query: 601 ttttaatgagtgaagccagccatagtgtattccagagccagagcag 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttttaatgagtgaagccagccatagtgtattccagagccagagcag 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)