BAC Information

Click to search

BAC

Clone NameMSMg01-326F06
Chromosome8 (Build37)
Map Location 37,669,379 - 37,669,979
singlet/doubletsinglet
Overlap geneDlc1
Upstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, LOC100042892
Downstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326F06.T7 (MSMg01no326_f06.b1)MSMg01-326F06.TJ (MSMg01no326_f06.g1)
ACCAG443981AG443982
length749754
length of high quality
(start - end)
369 (46 - 414)602 (76 - 677)
definitionCHROMAT_FILE: MSMg01no326_f06.b1 PHD_FILE: MSMg01no326_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:01 2005CHROMAT_FILE: MSMg01no326_f06.g1 PHD_FILE: MSMg01no326_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGACGAATACCAAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATT
CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGGAGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACCGGTAAGAACACATGCTCCACTATGTTC
ATAGCAGCCTTGTTCCCCCAACCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAATA
CTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGAT
GGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGAACT
CGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGA
TACCCAAGATATAAGATACAACTTGCCAAACGCATGAAATTCAAGAAGAA
CGAAGACCAAAGTGTGGACACTTTACCCTTTCTTAGAAATGGGAACAAA
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCACCAGATGGTGTCCTCCGC
CCAAAGAGTTTCTTGCCTATTCCACGGTAGGGAGCTCTTAAATCACTCAT
GTGGCTCTCAGTACTATTAAAGAAAAAAAAAGAAAAGATGGAAGCTTGGG
GCGTTTTCTATCTACCCTCTTGATCTGTTGAAGATTGGAGACAGAGATGC
TGCTTTCTAGGAAAGAAAATTCCTAGAAATAATCTAAGGAGGGGGATAAA
GAAGCCACTTTCCCCCCTGTGATGTGATGACAGCTTAATAAAGGGTTTTA
CTCTGAAAGAAGGAAACCTCCTCCATGGAGACATTCCACAAGCCTGCACC
CGGACCGACCGAGCACCCCCACACGACACCTCAATGAAGCAGAAATCACG
GCAAGTGAAATTTCCTCTGGGGAATCCTTTTGCCCAAGCAATTGCAAAGT
ACTGCTTTTAACCACTCAAACCAGGCCAGGGAGTGGTTCCCGTCACTGCC
ATGGTGTGCAGAAGTGAGGTCCCGAGTGACAGGGCTGTCAGGAACTCCAG
CCTCCACATTAATGTACTTTATTCCCAGGAATAGAANATATCTCCCAGCT
AATCAAAAACGGGCATCCGCGCTCCAGGATGAAGAGGTCAAACTGAGGAG
GACCTGAGCTACTGAGGAGATAGGTGCAGCAACATCCCCTCTCTCTAGTT
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_f06.g1 MSMg01no326_f06.g1 CHROMAT_FILE:
MSMg01no326_f06.g1 PHD_FILE: MSMg01no326_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:01 2005
         (602 letters)



>mm_chr8_37669179_37670179
          Length = 1001

 Score = 1114 bits (576), Expect = 0.0
 Identities = 595/605 (98%), Gaps = 7/605 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggcaccagatggtgtcctccgcccaaagagtttcttgcctattccacggtagggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggcaccagatggtgtcctccgcccaaagagtttcttgcctattccacggtagggagc 260

                                                                       
Query: 61  tcttaaatcactcatgtggctctcagtactattaaagaaaaaaaaagaaaagatggaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaaatcactcatgtggctctcagtactattaaagaaaaaaaaagaaaagatggaagc 320

                                                                       
Query: 121 ttggggcgttttctatctaccctcttgatctgttgaagattggagacagagatgctgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggggcgttttctatctaccctcttgatctgttgaagattggagacagagatgctgctt 380

                                                                       
Query: 181 tctaggaaagaaaattcctagaaataatctaaggagggggataaagaagccactttcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggaaagaaaattcctagaaataatctaaggagggggataaagaagccactttcccc 440

                                                                       
Query: 241 cctgtgatgtgatgacagcttaataaagggttttactctgaaagaaggaaacctcctcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgtgatgtgatgacagcttaataaagggttttactctgaaagaaggaaacctcctcca 500

                                                                       
Query: 301 tggagacattccacaagcctgcacccggaccgaccgagcaccccc---acacgacacctc 357
           |||||||||||||||||||||||||||||||||||||||||       | | ||||||||
Sbjct: 501 tggagacattccacaagcctgcacccggaccgaccgagcac----ttgagatgacacctc 556

                                                                       
Query: 358 aatgaagcagaaatcacggcaagtgaaatttcctctggggaatccttttgcccaagcaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatgaagcagaaatcacggcaagtgaaatttcctctggggaatccttttgcccaagcaat 616

                                                                       
Query: 418 tgcaaagtactgcttttaaccactcaaaccaggccagggagtggttcccgtcactgccat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgcaaagtactgcttttaaccactcaaaccaggccagggagtggttcccgtcactgccat 676

                                                                       
Query: 478 ggtgtgcagaagtgaggtcccgagtgacagggctgtcaggaactccagcctccacattaa 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggtgtgcagaagtgaggtcccgagtgacagggctgtcaggaactccagcctccacattaa 736

                                                                       
Query: 538 tgtactttattcccaggaatagaanatatctcccagctaatcaaaaacgggcatccgcgc 597
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtactttattcccaggaatagaaaatatctcccagctaatcaaaaacgggcatccgcgc 796

                
Query: 598 tccag 602
           |||||
Sbjct: 797 tccag 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space:   586672
Effective search space used:   586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)