BAC Information

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BAC

Clone NameMSMg01-326F20
Chromosome8 (Build37)
Map Location 50,736,885 - 50,737,165
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326F20.T7 (MSMg01no326_f20.b1)MSMg01-326F20.TJ (MSMg01no326_f20.g1)
ACCAG444009AG444010
length742743
length of high quality
(start - end)
85 (45 - 129)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no326_f20.b1 PHD_FILE: MSMg01no326_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:04 2005CHROMAT_FILE: MSMg01no326_f20.g1 PHD_FILE: MSMg01no326_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGCCGACAGCAAATCTTGTTAAAACCTTGCTGTTTCTGTATGGA
GGTGTGGCTCCTTTTTTTTTTTTTTGTTTTTGTGCTTGGTTTTGGATTTA
GCACAAAGACCAAGATTTGAGGTTTTCACATCTTTTTTTATTAGATTAAC
CATTTTCAAAGAAACGCTGTCCTATCTACCTTCATTCCTGGGGATGCCTA
AACTAAACCTTCTAGAACAGAAACACTCTCCTATCTAACCCTATTCCTGG
GCATGCCTAAACTAAACCTACTAAAACACTTACTTTCATTTTTTATTGAC
ATGTTTTATTGACATAGATCTTCCAGTGGAATTCCATTTCTTCCTATTGT
TTGAGGTTTCACACCCCCCAAATTTATGTATGTATTTGCATGTGTTGAGC
AAATCAATGGAATAAGGTCTCACAACTTTCAGACCTTTACTTTTCTAAGT
TAACAAAACAACCTAATTATTTTTATCCAATTTTTAAGTGACATTAATGG
GAAAAAAATGGAGCTCCAGCAAAGTCTCCAAGAAAATGCTGGCTAAGATG
TAGCTACTCTGCTCCTTGAATATGAAAAGAATAACTTACATTAATTTATA
TTTACTGCTAGAATTGAATGTCTTAAGTAGACTTCAGGACACATGATTCT
TGAGACTGCTCTGGCTATGAAATTCCTATACTTCAAGTAAAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTACAAGAAAAATTCTTGATATGTATTTGGTGTGTTTATG
CAAGGCAGATTATTAAATAATTTGAGAAACATCTGCAAATATAATCTATG
AAACAGAAATCCTAAAAAAGAGAGAAGAAGAAAATCCTTGAATGAGACAT
CTGTTGACTCTACCGCGAGCGGATTGAAGGCAATGAAGCTGATCCCCCTA
AGAACAAACCCTGCAACCCCACTACTCAAAGCAGAGATAATCCTGGTAAA
TGAAAACAGCAAGCACCCTTTTTTATTCTTTGAGGGTTTGCCTTACTTCA
GCCTTTAGAGCGTGTAGTTTGAATTTAAATAAGAAATGCAAAAATGCTTC
CAATAACAGCTAATCCCCGCACCCACTGGATAACTTTGAAGAGGACTGTG
AAGTGGATGTCACTTCACTTTCAGGACTGTAGATTCTGATCAACTGGACT
ACCTGTGATATTGTCCACCAGTGAAGTTTGAGATAGCTAGAACCTGTTAA
TATCAGTTTGAGTTTTAGAATTATTCTCCCAAGTATGTGAATATGCAACA
TGGAAACTAAAATATGACATATAATTATGTAACACATAGCTACTTGCCAT
TGATCGAAAATTTTAAAACTCCATGAACCTCCATTGTTTTATTGTTAACA
TGAGAATATGGTTATTTTTAAGCACATGCATTCTTCAATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_f20.g1 MSMg01no326_f20.g1 CHROMAT_FILE:
MSMg01no326_f20.g1 PHD_FILE: MSMg01no326_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:04 2005
         (284 letters)



>mm_chr8_50736685_50737365
          Length = 681

 Score =  449 bits (232), Expect = e-130
 Identities = 270/288 (93%), Gaps = 11/288 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcttgatatgtatttggtgtgtttatgcaaggcagattattaaataatttgagaaac 60
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 481 aattcttgatatgtgtttggtgtgtttatgcaaggcagattattaaataatttgagaagc 422

                                                                       
Query: 61  atctgcaaatataatctatgaaacagaaatcctaaaaaagagagaagaagaaaatccttg 120
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 421 atctgcaaatataatctatgaaacagaaatcctaaaaaa---agaagaagaaaatccttg 365

                                                                       
Query: 121 aatgagacatctgttgactctaccgcgagcggattgaaggcaatgaagctgatcccccta 180
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 364 aacgagacatctgttgactctaccgcgagcggtttgaaggcaatgaagctgatcccccta 305

                                                                       
Query: 181 agaacaaaccctgcaaccccactactcaaagcagagataatcctggtaaatgaaaacagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 304 agaacaaaccctgcaaccccactactcaaagcagagataatcctggtaaatgagtacagc 245

                                                           
Query: 241 aagcaccc----ttttttattctttgagggtttgccttacttcagcct 284
           ||||||||    ||    || |||||||||||||||||||||||||||
Sbjct: 244 aagcacccagggtt----atcctttgagggtttgccttacttcagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 681
Length adjustment: 9
Effective length of query: 275
Effective length of database: 672
Effective search space:   184800
Effective search space used:   184800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)