BAC Information

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BAC

Clone NameMSMg01-326H19
Chromosome8 (Build37)
Map Location 10,605,497 - 10,605,834
singlet/doubletsinglet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H19.T7 (MSMg01no326_h19.b1)MSMg01-326H19.TJ (MSMg01no326_h19.g1)
ACCAG444099AG444100
length709694
length of high quality
(start - end)
339 (71 - 409)289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no326_h19.b1 PHD_FILE: MSMg01no326_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:12 2005CHROMAT_FILE: MSMg01no326_h19.g1 PHD_FILE: MSMg01no326_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGCGGAA
TTCAACATCTTCCGAGAAAAACACTGAAGGTTGACCTCTAACCTCTACAT
GCATGACCTCTAACCTCTACATGCATGACCTCTAACCTCTACATGCACGC
ACACAGACATGCACGTGAATCTGCACACACATGTGCCTGTGTACACCTTT
GCACACATATGCATGCACTCATAAGCCCATGAACCCATGCACATACATAC
ACACACAAGTACATGCATGATACCATTTACTGTGAGAATATGGTTAAATT
AAAAAGCCTTGTGTGTTTGTGAGGATTACATGTTCATGCACACCCTTTTT
AACCTTAGATATTACACCAAAATAAAGATTATTCGGGATAAAATAATACC
CTGGTGGTCCCCACAATGTTAAAAGGAATGTCAGGACCAAGCCATCTTGT
GGCCCTAAGGTTAGCGTTCGGGGACATATTTGATGCCACGTAGGCGCAGC
CACATTATGAGCTGAGATCTTTCTAAGTAGCACTGATGAGGTGGTGTGAA
AAAAATCAATAATTTTAATCTTAAAAATAAATCTCTACAGTAGGCAAGCT
GTGGAAATCACTTGTGCTGATCTATAGGCGCCTCGGTGGAAAGGAAATGC
TGATTGTTACGGATAATAAATTGTCTTAATCCTGCTTGCGTTCCTGAGAG
ATGTGTCTG
TGGAGGCCGCCTGTTCATACCAGGGAGGTGACACTATAGTATGACAAAAA
AAAATTCAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGT
TACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTC
CTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGA
AAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATAC
TAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCG
ATGTTTGTTGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCA
GCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAA
CACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAA
AAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGAC
CAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAA
GGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCT
AAAGAAAGATATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATA
GACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h19.b1 MSMg01no326_h19.b1 CHROMAT_FILE:
MSMg01no326_h19.b1 PHD_FILE: MSMg01no326_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:12 2005
         (339 letters)



>mm_chr8_10605297_10606035
          Length = 739

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactgaaggttgacctctaacctctacatgcatgacctctaacctctacatgcatgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactgaaggttgacctctaacctctacatgcatgacctctaacctctacatgcatgacc 260

                                                                       
Query: 61  tctaacctctacatgcacgcacacagacatgcacgtgaatctgcacacacatgtgcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaacctctacatgcacgcacacagacatgcacgtgaatctgcacacacatgtgcctgt 320

                                                                       
Query: 121 gtacacctttgcacacatatgcatgcactcataagcccatgaacccatgcacatacatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacacctttgcacacatatgcatgcactcataagcccatgaacccatgcacatacatac 380

                                                                       
Query: 181 acacacaagtacatgcatgataccatttactgtgagaatatggttaaattaaaaagcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacaagtacatgcatgataccatttactgtgagaatatggttaaattaaaaagcctt 440

                                                                       
Query: 241 gtgtgtttgtgaggattacatgttcatgcacaccctttttaaccttagatattacaccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtttgtgaggattacatgttcatgcacaccctttttaaccttagatattacaccaa 500

                                                 
Query: 301 aataaagattattcgggataaaataataccctggtggt 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaagattattcgggataaaataataccctggtggt 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)