BAC Information

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BAC

Clone NameMSMg01-326P09
Chromosome8 (Build37)
Map Location 102,918,345 - 102,918,993
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P09.T7 (MSMg01no326_p09.b1)MSMg01-326P09.TJ (MSMg01no326_p09.g1)
ACCAG444445AG444446
length787725
length of high quality
(start - end)
220 (46 - 265)649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no326_p09.b1 PHD_FILE: MSMg01no326_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:45 2005CHROMAT_FILE: MSMg01no326_p09.g1 PHD_FILE: MSMg01no326_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATTTTCTCGATCAACATGTCTTTCTCTGTACCAATACCATGCAG
TTTTTATCACTATTGCTCTGTAGTAAAGCTTGAGGACAGGAATGGTGATT
TCCCCAACTGGTCTTTTATTGTTAAGAATTGTTTTGGCTATTCTGTTTTT
TGGGGATTTTTGTTTGTTTGTTTGTTTTGTTTTTTTGTTTTTTGTTTTGT
TTTGTTTGTTTTGCTCCTCTTTCTTCCTCTCCCCCCCCCCTTTTTTTCTC
CTCCCCCCCCCCTTTTTTTTTTTCTCCCACACCCCTCCTTTTTCTCTTTC
TCCCCTTTTTTCTCCCCCCCCCTCCCCTTCTCTTTCTTTTCATTCTTCTT
CTATTATTGTTTGCCCCCCCCCGGGGGATATTACTCCCACCACATCTTCT
TCACAATCACTCCTCCACCTCTCCGATATCTATCTTTACATCAATCCTTC
TCCCTTTTGCCTCTCTCCCCCCTTCCCCATATTCCTTTACCCCTTATCCT
TCCTCTTACCCGTCTCCCCCTTCATTACGACATCTACTCTCCGTACTCCA
TCCCATCCATCCCCCTCTGCCCCCTTTATCTCCCTCTACGATTCTTATCA
CCCATTTTTTCCTTTATTTCCCTCACTTCCCCTTCCTCGTCCTTTCTCTT
TCTCTTAAAATCTTCTTCCCCCCCCTCCTACATCATCTTTTCCCTCTTTA
TCCCATCTCCTCTTTTTTCCGCTTCTTTCCTATTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATGTGATTATCTGAGTTGGC
ACTCTCTATAGATAACTGGTTATGTTTAACCAATCGATGATAGAAGTGCA
TACATTAAAATGTACAAGAACTCTCAGAGTATTCCGACCAATGTACTCTA
CTCATCAATTTTGAGAAAGAATGGAAATCATTGATACAACTTCATTATTG
CATCCAATGGGCATAAAGAAATGGCTCTCTGGATGTGTTTCTCTATCACA
TAGTTCTTATTCCAAATGCTTCTAAGTTGTCCTAAACATTTGGCTTACAT
TTAGAAAAAAAATGATATTATCAAAGAAACCGCAGCACAAATCACAACTG
TCAACTCTCATAGATCTAGGCTTTAACTGACTGAGATGAATGACTTCATC
ATTGAATAAATCATTACTAATCATAATGTGTGCATGTGCGAGGACTGTGC
AATTGAGGCTGGCAGTATTGTGGCCTGCCCAAGACTAATTGCTAGGAATG
TGCCAGATGTTGTAAAAGTCTGGACACATTTGTGATAAAGCTGAATGGTG
CAAACTTGTTATGAAGCTAGAATTGTATGATTTAATGGCACAATCTATAT
TTCTGACATTGTAGGTCAAAGATATATAGTAAGTATAAAGAGTCTTTATT
AATAGTGTAAAAGGTTATTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p09.g1 MSMg01no326_p09.g1 CHROMAT_FILE:
MSMg01no326_p09.g1 PHD_FILE: MSMg01no326_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:45 2005
         (649 letters)



>mm_chr8_102918145_102919193
          Length = 1049

 Score = 1247 bits (645), Expect = 0.0
 Identities = 648/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatgtgattatctgagttggcactctctatagataactggttatgtttaaccaatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttatgtgattatctgagttggcactctctatagataactggttatgtttaaccaatcg 260

                                                                       
Query: 61  atgatagaagtgcatacattaaaatgtacaagaactctcagagtattccgaccaatgtac 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgatagaagtgcgtacattaaaatgtacaagaactctcagagtattccgaccaatgtac 320

                                                                       
Query: 121 tctactcatcaattttgagaaagaatggaaatcattgatacaacttcattattgcatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctactcatcaattttgagaaagaatggaaatcattgatacaacttcattattgcatcca 380

                                                                       
Query: 181 atgggcataaagaaatggctctctggatgtgtttctctatcacatagttcttattccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgggcataaagaaatggctctctggatgtgtttctctatcacatagttcttattccaaa 440

                                                                       
Query: 241 tgcttctaagttgtcctaaacatttggcttacatttagaaaaaaaatgatattatcaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttctaagttgtcctaaacatttggcttacatttagaaaaaaaatgatattatcaaag 500

                                                                       
Query: 301 aaaccgcagcacaaatcacaactgtcaactctcatagatctaggctttaactgactgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaccgcagcacaaatcacaactgtcaactctcatagatctaggctttaactgactgaga 560

                                                                       
Query: 361 tgaatgacttcatcattgaataaatcattactaatcataatgtgtgcatgtgcgaggact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatgacttcatcattgaataaatcattactaatcataatgtgtgcatgtgcgaggact 620

                                                                       
Query: 421 gtgcaattgaggctggcagtattgtggcctgcccaagactaattgctaggaatgtgccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcaattgaggctggcagtattgtggcctgcccaagactaattgctaggaatgtgccag 680

                                                                       
Query: 481 atgttgtaaaagtctggacacatttgtgataaagctgaatggtgcaaacttgttatgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgttgtaaaagtctggacacatttgtgataaagctgaatggtgcaaacttgttatgaag 740

                                                                       
Query: 541 ctagaattgtatgatttaatggcacaatctatatttctgacattgtaggtcaaagatata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagaattgtatgatttaatggcacaatctatatttctgacattgtaggtcaaagatata 800

                                                            
Query: 601 tagtaagtataaagagtctttattaatagtgtaaaaggttatttccctc 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagtaagtataaagagtctttattaatagtgtaaaaggttatttccctc 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)