BAC Information

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BAC

Clone NameMSMg01-326P14
Chromosome8 (Build37)
Map Location 95,724,830 - 95,725,493
singlet/doubletsinglet
Overlap geneEs22
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3
Downstream geneAU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P14.T7 (MSMg01no326_p14.b1)MSMg01-326P14.TJ (MSMg01no326_p14.g1)
ACCAG444454AG444455
length737742
length of high quality
(start - end)
691 (47 - 737)664 (77 - 740)
definitionCHROMAT_FILE: MSMg01no326_p14.b1 PHD_FILE: MSMg01no326_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:46 2005CHROMAT_FILE: MSMg01no326_p14.g1 PHD_FILE: MSMg01no326_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCCGCTCTGAGCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC
TATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT
TTTATCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTCTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTATT
TTCTCCTCTATAAGTTTCAAAATTCCAACTCAATTCCTCAACGAATTAGA
AAGGGCATTCGGCACCCCCATCTGGAATAACAAAAAACCGAGGATAGCAA
AAACTCTTCTCAAGGATAAAAGAACCTCTGCTGGAATCACCATGCCGGAT
CTAAAACTGTACTACAGAGCAATTGTGATCAAAACTGCATGGTACTGGTA
TAGTGACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGA
ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC
CAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGAACAACTGGCG
GTTATCATGTAGAAGAATGCGAATTGATTTATTTCTA
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTGATTCTGTTCCCAGGAATC
CCAATGGACAAGGGCTGCCCCATTGGCCAGAGTATGACCAAAAGGAAGGT
TATCTGCAGATTGGAGCCACCACCCAACAAGCCCAGAAGCTAAAAGAAAA
AGAAGTGGCTTTCTGGACTGAACTTCTGGCTAAGAAGCAACTGCAGACAG
AACACACTGAGCTATGAATGGGAGACTCTGTCAGCCTCACCCTCAGGGGA
GCCCAAATGAGACTACTTTACATGGAAGATGATTGTGGCCAAGGCTTTGG
GGAGACTGCAGAATTGTGTGGTGGGAGTGGACAGAGGCCAGAGAGAGAAT
ATTTGCACATGTGGACTCAATTTGAAAAAATAAATTTTGTTCCATAAGTC
AAATCAATATTGTAGATTGGAAATGAATCTAAGCTTCTCAGAGAGAGGCA
ATGTCATATGAAGATGGTTCCGCAGAAAATCCATTTGTGGTATGATTATC
CAGAAGTCTAAAGGAAGACAAGTACGGGGGAAAGAAGTAGGGATTTTGGC
ATCAATACATCAATGCATGAAGAAATTTAAAGGGTTTGGTGAGCTGTTAC
GAAGAAGTGGAGGCTAATAGGAGAGTAATAAGGTCCCTGGAACCACAGAT
GCAAGGAGGAGTCACACACATAGTCATTTCTTCGTGTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p14.g1 MSMg01no326_p14.g1 CHROMAT_FILE:
MSMg01no326_p14.g1 PHD_FILE: MSMg01no326_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:46 2005
         (664 letters)



>mm_chr8_95724630_95725693
          Length = 1064

 Score = 1261 bits (652), Expect = 0.0
 Identities = 661/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttgattctgttcccaggaatcccaatggacaagggctgccccattggccagagtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tatttgattctgttcccaggaatcccaatggacaagggctgccccattggccagagtatg 805

                                                                       
Query: 61  accaaaaggaaggttatctgcagattggagccaccacccaacaagcccagaagctaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 accaaaaggaaggttatctgcagattggagccaccacccaacaagcccagaagctgaaag 745

                                                                       
Query: 121 aaaaagaagtggctttctggactgaacttctggctaagaagcaactgcagacagaacaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 744 aaaaagaagtggctttctggactgaacttctggctaagaagcaactgccgacagaacaca 685

                                                                       
Query: 181 ctgagctatgaatgggagactctgtcagcctcaccctcaggggagcccaaatgagactac 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgagctgtgaatgggagactctgtcagcctcaccctcaggggagcccaaatgagactac 625

                                                                       
Query: 241 tttacatggaagatgattgtggccaaggctttggggagactgcagaattgtgtggtggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttacatggaagatgattgtggccaaggctttggggagactgcagaattgtgtggtggga 565

                                                                       
Query: 301 gtggacagaggccagagagagaatatttgcacatgtggactcaatttgaaaaaataaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtggacagaggccagagagagaatatttgcacatgtggactcaatttgaaaaaataaatt 505

                                                                       
Query: 361 ttgttccataagtcaaatcaatattgtagattggaaatgaatctaagcttctcagagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgttccataagtcaaatcaatattgtagattggaaatgaatctaagcttctcagagaga 445

                                                                       
Query: 421 ggcaatgtcatatgaagatggttccgcagaaaatccatttgtggtatgattatccagaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcaatgtcatatgaagatggttccgcagaaaatccatttgtggtatgattatccagaag 385

                                                                       
Query: 481 tctaaaggaagacaagtacgggggaaagaagtagggattttggcatcaatacatcaatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctaaaggaagacaagtacgggggaaagaagtagggattttggcatcaatacatcaatgc 325

                                                                       
Query: 541 atgaagaaatttaaagggtttggtgagctgttacgaagaagtggaggctaataggagagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaagaaatttaaagggtttggtgagctgttacgaagaagtggaggctaataggagagt 265

                                                                       
Query: 601 aataaggtccctggaaccacagatgcaaggaggagtcacacacatagtcatttcttcgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aataaggtccctggaaccacagatgcaaggaggagtcacacacatagtcatttcttcgtg 205

               
Query: 661 tata 664
           ||||
Sbjct: 204 tata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)